Anuvarsh Week 6
From LMU BioDB 2015
Revision as of 06:28, 12 October 2015 by Anuvarsh (Talk | contribs) (modified sed command for application.txt)
4 hours later... part one done!!!!!!!
Application.txt --> SQL commands
cat application.txt | sed "s/\t/~/g" | sed -r "s/( ){4}//g" | sed -r "s/( ){2}//g" | sed "s/ \~/~/g" | sed "s/\~ /~/g" | sed "s/\~\~/~null~/g" | sed "s/\~\~/~null~/g" | sed "s/\~\r$/~null/g" | sed "s/~/,'/1" | sed "s/~/','/1" | sed "s/~/',/1" | sed "s/~/,/1" | sed "s/~/,'/1" | sed "s/~/',/1" | sed "s/~/,'/1" | sed "s/~/','/1" |sed "s/~/,'/1" | sed "s/\r$/'/g" | sed "s/'null'/null/g" | sed "s/'null/null/g" | sed "s/^/insert into application(ApplNo,ApplType,SponsorApplicant, MostRecentLabelAvailableFlag,CurrentPatentFlag,ActionType,Chemical_Type,Ther_Potential,Orphan_Code) values(/g" | sed "s/$/);/g" | sed 1D > ~/public_html/application.sql.txt
Product.txt --> SQL commands
cat Product.txt | sed "s/\*\*Federal Register determination that product was not discontinued or withdrawn for safety or efficacy reasons\*\*//g" | sed "s/\*\*Federal Register determination that product was not discontinued or withdrawn for safety or efficacy\*\*//g" | sed "s/\*\*Federal Register notice determination that product was not discontinued or withdrawn for safety or efficacy reasons\*\*//g" | sed "s/\*\*Federal Registration determination that product was not discontinued or withdrawn for safety or efficacy reasons\*\*//g" | sed "s/See current Annual Edition, 1.8 Description of Special Situations, Levothyroxine Sodium//g" | sed "s/'//g" | sed "s/\t/*/g" | sed -r "s/( ){4}//g" | sed -r "s/( ){2}//g" | sed "s/ \*/*/g" | sed "s/\* /*/g" | sed "s/\*\*/*null*/g" | sed "s/\*\*/*null*/g" | sed "s/\*/,/1" | sed "s/\*/,'/1" | sed "s/\*/','/1" | sed "s/\*/',/1" | sed "s/\*/,'/1" | sed "s/\*/',/1" | sed "s/\*/,'/1" | sed "s/\*/','/1" | sed "s/\r$/'/g" | sed "s/^/insert into product(ApplNo,ProductNo,Form,Dosage,ProductMktStatus, TECode,ReferenceDrug,drugname,activeingred) values(/g" | sed "s/$/);/g" | sed 1D > ~/public_html/Product.sql.txt
Questions to Answer
- Provide the DDL (
create table
) statements that you used for your application and product tables. - Provide the
sed
command sequences that you used to convert the raw text files into sequences of SQLinsert
statements. - Using the command line, how can you determine the number of records in each file? Provide the command.
- Using SQL, how can you determine the number of records in the table corresponding to the file? Provide the SQL
select
statement. - In your database, are these numbers the same or different? Explain why you think so.
- For the remaining questions, supply (a) the answer to the question and (b) the SQL statement that you used to answer the question.
- What are the names of the drug products that are administered in the form
INJECTABLE;INTRAVENOUS, SUBCUTANEOUS
? - What are the names of the drug products whose active ingredient (activeingred) is
ATROPINE
? - In what forms and dosages can the drug product named
BENADRYL
be administered? - Which drug products have a name ending in
ESTROL
? - Produce a table listing all of the known values for the therapeutic_potential column in the application table and how many application records there are of each. (Side note: The therapeutic_potential codes are explained in the ReviewClass_Lookup.txt file, in case you’re interested.)
- Produce a table listing all of the known values for the chemical_type column in the application table and how many application records there are of each. (Side note: The chemical_type codes are explained in the ChemTypeLookup.txt file, in case you’re interested.)
- What are the names of the drug products that are sponsored (sponsor applicant column) by
MERCK
? - Which sponsor applicant companies have the text
LABS
in their names and have products whose active ingredients (activeingred) include bothASPIRIN
andCAFFEINE
?