Emilysimso Week 10

In Class Notes - what you need for annotated bibliography

1. Genome Sequence paper - find the best one (not for a subspecies)
2. Microarray data paper - data that will be analyzed
3. 1-2 papers per group member on species (will rank on group page on which to focus on)\

Electronic lab notebook - details the search for these papers

Individual page - annotate bibliography

Teams page - copy genome paper and create ranked list

Use APA style to cite, make sure to translate into wiki text

DOI = primary ID for an article (digital object identifier)

Genome Sequence Paper

PubMed

• First keyword search: Shewanella Oneidensis genome sequence, 128 results from PubMed
• Second search: Shewanella Oneidensis in Genome, there were 5 publications
• Advanced search: Shewanella Oneidensis genome (in Title/Abstract section), 3 results

Google Scholar

• First search: Shewanella Oneidensis genome sequence, 7,450 results
• Second search: Shewanella Oneidensis complete genome sequence, 6,460 results
  • Removed patents, had 6,220 results

Web of Science

• First search: Shewanella Oneidensis genome, 441 results
  • Refined by selecting just articles, got 262 results

Chosen Paper Information

• APA citation: Heidelberg, J. F., Paulsen, I. T., Nelson, K. E., Gaidos, E. J., Nelson, W. C., Read, T. D., ... & Fraser, C. M. (2002). Genome sequence of the dissimilatory metal ion–reducing bacterium Shewanella oneidensis. Nature biotechnology, 20(11), 1118-1123.
• PubMed abstract: {{http://www.ncbi.nlm.nih.gov/pubmed/?term=Genome+sequence+of+the+dissimilatory+metal+ion%E2%80%93reducing+bacterium+Shewanella+oneidensis}}
• PubMedCentral article:
• Full text from publisher website: Template:Http://www.nature.com/nbt/journal/v20/n11/full/nbt749.html
• PDF file from publisher website: Template:Http://www.nature.com/nbt/journal/v20/n11/pdf/nbt749.pdf
• Article rights:
• Publishing organization of article:
• Print or online only:
• Has LMU paid subscription:

Microarray

• Browsed all of ArrayExpress
• Filtered search results: Shewanella oneidensis, RNA assay, Array assay, All arrays
  • Had 20 experiments
  • Look for transcription profiling by array
  • Want a large assay number