Emilysimso Week 10

In Class Notes - what you need for annotated bibliography

Genome Sequence paper - find the best one (not for a subspecies)
Microarray data paper - data that will be analyzed
1-2 papers per group member on species (will rank on group page on which to focus on)\

Electronic lab notebook - details the search for these papers

Individual page - annotate bibliography

Teams page - copy genome paper and create ranked list

Use APA style to cite, make sure to translate into wiki text

DOI = primary ID for an article (digital object identifier)

Genome Sequence Paper

First keyword search: Shewanella Oneidensis genome sequence, 128 results from PubMed
Second search: Shewanella Oneidensis in Genome, there were 5 publications
Advanced search: Shewanella Oneidensis genome (in Title/Abstract section), 3 results

First search: Shewanella Oneidensis genome sequence, 7,450 results
Second search: Shewanella Oneidensis complete genome sequence, 6,460 results
- Removed patents, had 6,220 results
- Searched for papers since 2011, got 2,950 results

First search: Shewanella Oneidensis genome, 441 results
- Refined by selecting just articles, got 262 results

APA citation: Heidelberg, J. F., Paulsen, I. T., Nelson, K. E., Gaidos, E. J., Nelson, W. C., Read, T. D., ... & Fraser, C. M. (2002). Genome sequence of the dissimilatory metal ion–reducing bacterium Shewanella oneidensis. Nature biotechnology, 20(11), 1118-1123.
PubMed abstract
PubMedCentral article:
Full text from publisher website
PDF file from publisher website
Article rights: copyright owned by publisher
Publishing organization of article: Nature Publishing Group
Print or online only: online only
Has LMU paid subscription: no

Browsed all of ArrayExpress
Filtered search results: Shewanella oneidensis, RNA assay, Array assay, All arrays
- Had 20 experiments
- Look for transcription profiling by array
- Want a large assay number