Emilysimso Week 12

Goals

• Normalize data, statistical analysis of raw data

File Notes

• Will work on all "F" files
• 52 chips total - 104 files (one for Cy3, one for Cy5)
• sdrf file has 208 - duplicates
• Need columns G, K, L, H
• Log2 (Cy5 signal median-Cy5 signal background / Cy3 signal median - Cy3 signal background)

Files

• F1_1_Cy3: File:GSM496756 MR-1 F1 1 Cy3.xlsx
• F1_1_Cy5: File:GSM496756 MR-1 F1 1 Cy5.xlsx
• F1_2_Cy3: File:GSM496757 MR-1 F1 2 Cy3.xlsx
• F1_2_Cy5: File:GSM496757 MR-1 F1 2 Cy5.xlsx
• F1_3_Cy3: File:GSM496758 MR-1 F1 3 Cy3.xlsx
• F1_3_Cy5: File:GSM496758 MR-1 F1 3 Cy5.xlsx
• F1_4_Cy3: File:GSM496759 MR-1 F1 4 Cy3.xlsx
• F1_4_Cy5: File:GSM496759 MR-1 F1 4 Cy5.xlsx
• F5_1_Cy3: File:GSM496760 MR-1 F5 1 Cy3.xlsx
• F5_1_Cy5: File:GSM496760 MR-1 F5 1 Cy5.xlsx
• F5_2_Cy3: File:GSM496761 MR-1 F5 2 Cy3.xlsx
• F5_2_Cy5: File:GSM496761 MR-1 F5 2 Cy5.xlsx
• F5_3_Cy3: File:GSM496762 MR-1 F5 3 Cy3.xlsx
• F5_3_Cy5: File:GSM496762 MR-1 F5 3 Cy5.xlsx
• F5_4_Cy3: File:GSM496763 MR-1 F5 4 Cy3.xlsx
• F5_4_Cy5: File:GSM496763 MR-1 F5 4 Cy5.xlsx
• F10_1_Cy3: File:GSM496764 MR-1 F10 1 Cy3.xlsx
• F10_1_Cy5: File:GSM496764 MR-1 F10 1 Cy5.xlsx
• F10_2_Cy3: File:GSM496765 MR-1 F10 2 Cy3.xlsx
• F10_2_Cy5: File:GSM496765 MR-1 F10 2 Cy5.xlsx
• F10_3_Cy3: File:GSM496766 MR-1 F10 3 Cy3.xlsx
• F10_3_Cy5: File:GSM496766 MR-1 F10 3 Cy5.xlsx
• F10_4_Cy3: File:GSM496767 MR-1 F10 4 Cy3.xlsx
• F10_4_Cy5: File:GSM496767 MR-1 F10 4 Cy5.xlsx
• F20_1_Cy3: File:GSM496768 MR-1 F20 1 Cy3.xlsx