Troque Week 12
From LMU BioDB 2015
Contents
Things to note
- Taxonomy ID: 623
- UP000001006
- File management system: Wiki
Export Information
Version of GenMAPP Builder:
- gmbuilder-3.0.0-build-5
Computer on which export was run:
- Front of the room, 3rd computer from the right.
Postgres Database name:
- Shigella flexneri 20151911
UniProt XML filename (give filename and upload and link to compressed file):
- UniProt XML version (The version information can be found at the UniProt News Page): UniProt release 2015_11
- UniProt XML download link: Click here
- Time taken to import: 4.48 minutes
- Note:
GO OBO-XML filename (give filename and upload and link to compressed file):
- GO OBO-XML version (The version information can be found in the file properties after the file downloaded from the GO Download page has been unzipped): Version created on 11/19/2015 (at 2:24 AM)
- GO OBO-XML download link: Click here to download.
- Time taken to import: 7.00 minutes
- Time taken to process: 4.99 minutes
- Note:
GOA filename (give filename and upload and link to compressed file):
- GOA version (News on this page records past releases; current information can be found in the Last modified field on the FTP site): Version released on .
- GOA download link: Click here to download.
- Time taken to import: 0.06 minutes
- Note:
Name of .gdb file (give filename and upload and link to compressed file):
- Time taken to export: 1 Hours, 32 Minutes, 33 Seconds
- Start time: 4:06:13 PM PM PDT
- End time: 5:38:46 PM PDT
- Note:
TallyEngine
- Run the TallyEngine in GenMAPP Builder and record the number of records for UniProt and GO in the XML data and in the Postgres databases.
- Choose the menu item Tallies > Run XML and Database Tallies for UniProt and GO...
- Choose the UniProt and GO OBO XML files that was uploaded from the previous sections of this assignment.
- Here is the screenshot of the tally result:
Assignment Links
Weekly Assignments
- Week 1
- Week 2
- Week 3
- Week 4
- Week 5
- Week 6
- Week 7
- Week 8
- Week 9
- Week 10
- Week 11
- Week 12
- No Week 13 Assignment
- Week 14
- Week 15
Individual Journal Entries
- Week 1 - This is technically the user page.
- Week 2
- Week 3
- Week 4
- Week 5
- Week 6
- Week 7
- Week 8
- Week 9
- Week 10
- Week 11
- Week 12
- No Week 13 Assignment
- Week 14
- Week 15