Troque Week 12

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Revision as of 00:18, 22 November 2015 by Troque (Talk | contribs) (Linking tally engine results)

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Things to note

  • Taxonomy ID: 623
  • UP000001006
  • File management system: Wiki

Export Information

Version of GenMAPP Builder:

  • gmbuilder-3.0.0-build-5

Computer on which export was run:

  • Front of the room, 3rd computer from the right.

Postgres Database name:

  • Shigella flexneri 20151911

UniProt XML filename (give filename and upload and link to compressed file):

  • UniProt XML version (The version information can be found at the UniProt News Page): UniProt release 2015_11
  • UniProt XML download link: Click here
  • Time taken to import: 4.48 minutes
    • Note:

GO OBO-XML filename (give filename and upload and link to compressed file):

  • GO OBO-XML version (The version information can be found in the file properties after the file downloaded from the GO Download page has been unzipped): Version created on 11/19/2015 (at 2:24 AM)
  • GO OBO-XML download link: Click here to download.
  • Time taken to import: 7.00 minutes
  • Time taken to process: 4.99 minutes
    • Note:

GOA filename (give filename and upload and link to compressed file):

  • GOA version (News on this page records past releases; current information can be found in the Last modified field on the FTP site): Version released on .
  • GOA download link: Click here to download.
  • Time taken to import: 0.06 minutes
    • Note:

Name of .gdb file (give filename and upload and link to compressed file):

  • Time taken to export: 1 Hours, 32 Minutes, 33 Seconds
    • Start time: 4:06:13 PM PM PDT
    • End time: 5:38:46 PM PDT
    • Note:

TallyEngine

  • Run the TallyEngine in GenMAPP Builder and record the number of records for UniProt and GO in the XML data and in the Postgres databases.
    • Choose the menu item Tallies > Run XML and Database Tallies for UniProt and GO...
    • Choose the UniProt and GO OBO XML files that was uploaded from the previous sections of this assignment.
    • Here is the screenshot of the tally result:

TallyEngine results OTS 112115.jpg

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