Lenaolufson Week 15

12/8/15

After preparing it for GenMAPP, here are the .xls and .txt files:
- File:Bpertussis CompiledRawData MS2015-3.xlsx
- File:Bpertussis CompiledRawData MS2015-3.txt
p-value less than 0.05: 1923/3552
p-value less than 0.01: 1028/3552
p-value less than 0.001: 242/3552
p-value less than 0.0001: 40/3552
p < 0.05 for the Bonferroni-corrected p value: 9/3552
p < 0.05 for the Benjamini and Hochberg-corrected p value: 1365/3552File:Gene ontology results.png
Keeping the (unadjusted) "Pvalue" filter at p < 0.05, filter the "Avg_LogFC_all" column to show all genes with an average log fold change greater than zero. How many are there?
- 964/3552
Keeping the (unadjusted) "Pvalue" filter at p < 0.05, filter the "Avg_LogFC_all" column to show all genes with an average log fold change less than zero. How many are there?
- 959/3552
What about an average log fold change of > 0.25 and p < 0.05?
- 874/3552
Or an average log fold change of < -0.25 and p < 0.05?
- 848/3552
the fold change cut-off of greater than 0.25 or less than -0.25 and the unadjusted p value cut off of p < 0.05?
- 1722/3552
numbers of errors found when running the .txt file in the GenMAPP database: 342 errors
23 replacements for the #DIV/0!
- 339 errors with new .txt file
links to files created: