Aporras1 Week 15 - Revision history

Aporras1: /* Deliverables Checklist */ removed note

2017-12-16T00:16:59Z

‎Deliverables Checklist: removed note

2017-12-16T00:15:18Z

‎Final Paper/Group Report: changed name displayed

2017-12-15T23:53:46Z

final paper

2017-12-12T07:15:08Z

final powerpoint deliverable

2017-12-12T03:37:12Z

‎Acknowledgements: statement of individual work

2017-12-09T23:33:11Z

‎Deliverables Checklist: typo fixed

2017-12-09T23:15:35Z

‎Deliverables Checklist: stem file replace

2017-12-09T23:05:50Z

‎Deliverables Checklist: week 14 link

2017-12-09T23:05:10Z

‎Deliverables Checklist: typo

2017-12-09T23:04:08Z

‎Deliverables Checklist: summaries for weeks 8 10 and 14

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 #* Summary for [[Aporras1_Week_14]]: Made edits to [[Aporras1_Week_8]] and [[Aporras1_Week_10]] according to feedback from [[User:Kdahlquist|Dr. Dahlquist]] & [[User:Dondi|Dr. Dionisio]]. Used the profile 22 genelist and ranked transcription factors with YEASTRACT by significance and selected the most significant ones with low P-values. Generated a regulation matrix using YEASTRACT and created an adjacency matrix with a network to visualize with GRNsight. The network was trimmed down to 15 genes and MATLAB was used to generate an output. Both the output and the original network were visualized with GRNsight.
 #** Electronic notebook found in "Electronic Notebook" section of [[Aporras1_Week_14]].
 ==Final Powerpoint Presentation==

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 ==Final Paper/Group Report==
-[[Media:JASPAR Final Paper.pdf]]
+[[Media:JASPAR Final Paper.pdf|JASPAR the Friendly Ghost Final Group Report]]
 ==Acknowledgements==

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 ==Final Powerpoint Presentation==
 [[Media:JASPAR The Friendly Ghost Group Presentation.pdf]]
 ==Acknowledgements==

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 #** Electronic notebook found in "Electronic Notebook" section of [[Aporras1_Week_14]].
 #* Note: make a summary and provide links to individual pages with electronic notebooks.
 ==Acknowledgements==

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 # Received file used for GRNsight visualization, received in class direction and instruction from [[User:Kdahlquist|Dr. Dahlquist]].
 # Met up with group members in [[JASPAR the Friendly Ghost]] after the Thursday 12/01/2017 class and outside of class 12/09/2017 to discuss an outline of what needed to be completed and to work on the presentation.
 [[User:Aporras1|Aporras1]] ([[User talk:Aporras1|talk]]) 16:11, 7 December 2017 (PST)

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 ===Deliverables Checklist===
 # Excel spreadsheet with ANOVA results/stem formatting (''.xlsx'')
-#* #[[Media:AP dZAP1 stem.xlsx]]
+#*[[Media:AP dZAP1 stem.xlsx]]
 # PowerPoint of screenshots of stem results (''.pptx'')
 #* [[Media:AP dZAP1 STEM Screenshots & p-values.zip]]

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 #* Expression vs Time Images generated from MATLAB
 #** [[Media:Output Images from 15-gene 44-edge teamJASPAR Sigmoid estimation.zip]]
-# Electronic notebook corresponding to these the microarray results files ([[Week 8]], [[Week 10]]) support ''reproducible research'' so that all manipulations of the data and files are documented so that someone else could begin with your starting file, follow the protocol, and obtain your results.
+# Electronic notebook corresponding to these the microarray results files ([[Week 8]], [[Week 10]], & [[Week 14]]) support ''reproducible research'' so that all manipulations of the data and files are documented so that someone else could begin with your starting file, follow the protocol, and obtain your results.
 #* Summary for [[Aporras1_Week_8]]: In week 8, performed statistical analysis on the deletion ZAP1 using provided ANOVA. Specfically, Bonferroni & p value correction and Benjamini & Hochberg p value was calculated. The data examined the time intervals of 15 minutes, 30 minutes, 60 minutes, 90 minutes, and 120 minutes during cold shock.
 #** Electronic notebook found in "Electronic Notebook" section of [[Aporras1_Week_8]]