Aporras1 Week 4 - Revision history

Aporras1: added zip file

2017-09-26T07:02:14Z

added zip file

2017-09-26T06:28:40Z

‎References: image reference

2017-09-26T06:28:01Z

‎Additional Information: added image

2017-09-26T06:17:06Z

‎Additional Information: fixing first linbe

2017-09-26T06:15:28Z

‎References: reference for images

2017-09-26T06:13:29Z

‎Additional Information: added actual sequences

2017-09-26T06:03:23Z

‎References: final reference

2017-09-26T06:01:46Z

‎Additional Information: need to add image

2017-09-26T06:00:22Z

‎Additional Information: why we chose the gene

2017-09-26T05:51:30Z

‎Additional Information: differences in content

← Older revision		Revision as of 07:02, 26 September 2017
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	[[File:Image of YMR199W.png\|700px\|File:700pixels]]		[[File:Image of YMR199W.png\|700px\|File:700pixels]]
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		+	==Favorite Gene Page==
		+
		+	[[File:Our Favorite Gene Antonio and Eddie.zip]]

	==Acknowledgements==		==Acknowledgements==

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 #LMU BioDB 2017. (2017). Week 3. Retrieved September 16, 2017, from https://xmlpipedb.cs.lmu.edu/biodb/fall2017/index.php/Week_3
 #Ncbi.nlm.nih.gov. (2017). CLN1 cyclin CLN1 [Saccharomyces cerevisiae S288C] - Gene - NCBI. [online] Available at: https://www.ncbi.nlm.nih.gov/gene/855239 [Accessed 26 Sep. 2017].
 #Uniprot.org. (2017). CLN1 - G1/S-specific cyclin CLN1 - Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) - CLN1 gene & protein. [online] Available at: http://www.uniprot.org/uniprot/P20437#subcellular_location [Accessed 26 Sep. 2017].
 #Yeastgenome.org. (2017). CLN1 | SGD. [online] Available at: https://www.yeastgenome.org/locus/S000004812 [Accessed 26 Sep. 2017].

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 '''Why we chose our gene:''' We chose our gene because we wanted to pick a gene associated with the cell cycle. Specifically, genes that have to do with cancer and mutations in genes that result in cancers e.g. tumor suppressors. Although there weren't tumor suppressor genes for yeast, possible issues with genes promoting the cell cycle was as close as we could go regarding yeast genes.
-Image
+'''Image of yeast strain TKach2012_YMR199W:'''
 ==Acknowledgements==

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 '''DNA Sequence:''' Chromosome XIII; NC_001145.3 (662644..664284)
 ATGAACCACT CAGAAGTGAA AACTGGGTTA ATTGTCACTG CAAAGCAGAC ATATTACCCA
 ATTGAATTGT CCAATGCAGA ACTACTAACT CATTACGAAA CCATACAGGA ATATCACGAG
 GAAATCTCTC AAAATGTGCT GGTCCAATCT TCCAAGACAA AACCAGACAT AAAATTGATC
 GATCAGCAAC CGGAGATGAA TCCTCATCAA ACTAGAGAAG CCATAGTAAC ATTTTTGTAT

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 #Ensembl.org. (2017). Gene: CLN1 (YMR199W) - Supporting evidence - Saccharomyces cerevisiae - Ensembl genome browser 90. [online] Available at: https://www.ensembl.org/Saccharomyces_cerevisiae/Gene/Evidence?db=core;g=YMR199W;r=XIII:662644-664284;t=YMR199W [Accessed 26 Sep. 2017].
 #LMU BioDB 2017. (2017). Week 3. Retrieved September 16, 2017, from https://xmlpipedb.cs.lmu.edu/biodb/fall2017/index.php/Week_3
 #Ncbi.nlm.nih.gov. (2017). CLN1 cyclin CLN1 [Saccharomyces cerevisiae S288C] - Gene - NCBI. [online] Available at: https://www.ncbi.nlm.nih.gov/gene/855239 [Accessed 26 Sep. 2017].
 #Uniprot.org. (2017). CLN1 - G1/S-specific cyclin CLN1 - Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) - CLN1 gene & protein. [online] Available at: http://www.uniprot.org/uniprot/P20437#subcellular_location [Accessed 26 Sep. 2017].
 #Yeastgenome.org. (2017). CLN1 | SGD. [online] Available at: https://www.yeastgenome.org/locus/S000004812 [Accessed 26 Sep. 2017].

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 '''DNA Sequence:''' Chromosome XIII; NC_001145.3 (662644..664284)
 '''Protein Sequence Corresponding to CLN1:''' NP_013926.1
 '''Function of CLN1:''' CLN1 Encodes for a G1 cyclin which regulates the cell cycle by activating CDKs at the correct times within the cell cycle thus promoting G1 phase to S phase.

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 '''Differences in content, the information, or data itself:''' Most of the overall information was the same regarding data e.g. function, mRNA name, protein name, processes in which CLN1 is involved in and where it's found within the cell. The primary difference was the depth in which each of the sites went into regarding CLN1.
-Were there differences in presentation of the information?
+'''Differences in the presentation of the information:''' Most of the sites had easy navigation through the information on CLN1. The only site which was slightly more difficult to navigate was Ensembl because of the setup for the respective sections on the right side of the page. The other three databases had it in one single page and links to each section respectively.
-Why did you choose your particular gene? i.e., why is it interesting to you and your partner?
 Include an image related to your gene (be careful that you do not violate any copyright restrictions!)
 Please make the image something scientific (not like the random images seen on the SGD blog posts).