Bhamilton18 Electronic Notebook - Revision history

Bhamilton18: Clarified "STOP" codon

2017-09-12T03:46:48Z

Clarified "STOP" codon

Bhamilton18 at 23:09, 9 September 2017

2017-09-09T23:09:33Z

Bhamilton18: negative frames

2017-09-09T22:58:41Z

negative frames

Bhamilton18: +3 strand

2017-09-09T22:54:01Z

+3 strand

Bhamilton18: RNA Strand

2017-09-09T22:50:04Z

RNA Strand

New page

==Genetic Code==

'''Original Strand:'''

5'-cgtatgctaataccatgttccgcgtataacccagccgccagttccgctggcggcatttta-3’

'''Complementary Strand:'''

3'-gcatacgattatggtacaaggcgcatattgggtcggcggtcaaggcgaccgccgtaaaat-5'

'''RNA Strand:'''

5'-cguaugcuaauaccauguuccgcguauaacccagccgccaguuccgcuggcggcauuuua-3’ (Strand 1)

3'-gcauacgauuaugguacaaggcgcauauugggucggcggucaaggcgaccgccguaaaau-5' (Strand 2)

===Reading Frames===

'''Reading Frame +1'''
5'-cgu aug cua aua cca ugu ucc gcg uau aac cca gcc gcc agu ucc gcu ggc ggc auu uua-3’ (Strand 1)

5'- R-M-L-I-P-C-S-A-Y-N-P-A-A-S-S-A-G-G-I-L-3'

'''Reading Frame + 2'''

5'-c(skip) gua ugc uaa uac cau guu ccg cgu aua acc cag ccg cca guu ccg cug gcg gca uuu ua(skip)-3’ (Strand 1)

5'-V-S-Stop-Y-H-V-P-R-I-T-Q-P-P-V-P-L-A-A-F-3'

'''Reading Frame +3:'''

5'-cg(skip) uau gcu aau acc aug uuc cgc gua uaa ccc agc cgc cag uuc cgc ugg cgg cau uuu a(skip)-3’ (Strand 1)

5'-Y-A

@@ Line 26: / Line 26: @@
 '-c(skip)  gua ugc uaa uac cau guu ccg cgu aua acc cag ccg cca guu ccg cug gcg gca uuu ua(skip)-3’ (Strand 1)
-'-V-S-Stop-Y-H-V-P-R-I-T-Q-P-P-V-P-L-A-A-F-3'
+'-V-S-Stop|-Y-H-V-P-R-I-T-Q-P-P-V-P-L-A-A-F-3' <!--Bar for stopping the gene, but translated rest of it to show ability to understand-->
 '''Reading Frame +3:'''
@@ Line 32: / Line 32: @@
 '-cg(skip) uau gcu aau acc aug uuc cgc gua uaa ccc agc cgc cag uuc cgc ugg cgg cau uuu a(skip)-3’ (Strand 1)
-'-Y-A-N-T-M-F-R-V-Stop-P-S-R-Q-F-R-W-R-H-F-3'
+'-Y-A-N-T-M-F-R-V-Stop|-P-S-R-Q-F-R-W-R-H-F-3' <!--Bar for stopping the gene, but translated rest of it to show ability to understand-->
 '''Reading Frame -1'''
 '-gca uac gau uau ggu aca agg cgc aua uug ggu cgg cgg uca agg cga ccg ccg uaa aau-5' (Strand 2)
-'-A-Y-D-Y-G-T-R-R-I-L-G-R-R-S-R-R-P-P-Stop-N-5'
+'-A-Y-D-Y-G-T-R-R-I-L-G-R-R-S-R-R-P-P-Stop|-N-5' <!--Bar for stopping the gene, but translated rest of it to show ability to understand-->
 '''Reading Frame -2'''
@@ Line 48: / Line 48: @@
 '-I-R-L-W-Y-K-A-H-I-G-S-A-V-K-A-T-A-V-K-5'
 <br>
 The following readings frames are: '''open reading frames:''' +1, -2, -3 <!--These strands do not contain a "stop" codon-->

@@ Line 30: / Line 30: @@
 '''Reading Frame +3:'''
-'-cg(skip) uau gcu aau acc aug uuc cgc gua uaa ccc agc cgc cag uuc cgc ugg(w) cgg cau uuu a(skip)-3’ (Strand 1)
+'-cg(skip) uau gcu aau acc aug uuc cgc gua uaa ccc agc cgc cag uuc cgc ugg cgg cau uuu a(skip)-3’ (Strand 1)
-'-Y-A-N-T-M-F-R-V-L-P-S-R-Q-F-R-W-R-H-F-3'
+'-Y-A-N-T-M-F-R-V-Stop-P-S-R-Q-F-R-W-R-H-F-3'
 '''Reading Frame -1'''
 '-gca uac gau uau ggu aca agg cgc aua uug ggu cgg cgg uca agg cga ccg ccg uaa aau-5' (Strand 2)
 '''Reading Frame -2'''
 '-g(skip) cau acg auu aug gua caa ggc gca uau ugg guc ggc ggu caa ggc gac cgc cgu aaa au(skip)-5' (Strand 2)
 '''Reading Frame -3'''
 '-gc(skip) aua cga uua ugg uac aag gcg cau auu ggg ucg gcg guc aag gcg acc gcc gua aaa u(skip)-5' (Strand 2)

← Older revision		Revision as of 22:58, 9 September 2017
Line 33:		Line 33:

	5'-Y-A-N-T-M-F-R-V-L-P-S-R-Q-F-R-W-R-H-F-3'		5'-Y-A-N-T-M-F-R-V-L-P-S-R-Q-F-R-W-R-H-F-3'
		+
		+	'''Reading Frame -1'''
		+	3'-gca uac gau uau ggu aca agg cgc aua uug ggu cgg cgg uca agg cga ccg ccg uaa aau-5' (Strand 2)
		+
		+	'''Reading Frame -2'''
		+	3'-g(skip) cau acg auu aug gua caa ggc gca uau ugg guc ggc ggu caa ggc gac cgc cgu aaa au(skip)-5' (Strand 2)
		+
		+	'''Reading Frame -3'''
		+	3'-gc(skip) aua cga uua ugg uac aag gcg cau auu ggg ucg gcg guc aag gcg acc gcc gua aaa u(skip)-5' (Strand 2)

@@ Line 30: / Line 30: @@
 '''Reading Frame +3:'''
-'-cg(skip) uau gcu aau acc aug uuc cgc gua uaa ccc agc cgc cag uuc cgc ugg cgg cau uuu a(skip)-3’ (Strand 1)
+'-cg(skip) uau gcu aau acc aug uuc cgc gua uaa ccc agc cgc cag uuc cgc ugg(w) cgg cau uuu a(skip)-3’ (Strand 1)
-'-Y-A
+'-Y-A-N-T-M-F-R-V-L-P-S-R-Q-F-R-W-R-H-F-3'