Bhamilton18 Week 3 - Revision history

Bhamilton18: added category

2017-09-26T04:29:45Z

added category

2017-09-26T04:27:29Z

Added links to the page

2017-09-18T02:50:49Z

deleted spaced in notebook and added LMU homepage acknowledgments

2017-09-18T02:48:27Z

Added identifiers

2017-09-18T02:34:15Z

Added an acknowledgment and notebook section as well as completed the just answers

2017-09-18T01:31:37Z

Added the first part of just the answers

2017-09-18T01:22:19Z

Took away the first picture on the page to make it less crowded.

2017-09-18T01:05:30Z

Added to question 1 answer

2017-09-18T00:58:09Z

2017-09-18T00:41:31Z

Added questions onto the page

← Older revision		Revision as of 04:29, 26 September 2017
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	#LMU BioDB 2017. (2017). Week 3. Retrieved September 14, 2017, from https://xmlpipedb.cs.lmu.edu/biodb/fall2017/index.php/Week_3		#LMU BioDB 2017. (2017). Week 3. Retrieved September 14, 2017, from https://xmlpipedb.cs.lmu.edu/biodb/fall2017/index.php/Week_3
	#Manual -- curl usage explained. Retrieved September 17, 2017, from https://curl.haxx.se/docs/manual.html		#Manual -- curl usage explained. Retrieved September 17, 2017, from https://curl.haxx.se/docs/manual.html
		+
		+	[[Category:Journal Entry]]

@@ Line 44: / Line 44: @@
 #When looking to find just the answers, I first focused on getting rid of the more "extra" code. I began by deleting the text before and after the genetic code. Then I focused on getting rid of the "stuff" in between the brackets. After I looked to separate the capital letters from one another and add "STOP" codons and "Met" codons.
+{{Template:Bhamilton18}}
 ==Acknowledgements==
 #This week I worked with my partner [[user:mbalducc|Mary Balducci]] on the hack-a-page segment of the homework. We collaborated on which website to "hack" and how to format the screenshots/pictures onto our respective web pages.

@@ Line 41: / Line 41: @@
 #When using the "-d" function we are extracting the raw data from the file. We input a strand into the text bar through the command window and then retrieve every element of the URL including formatting, the translation and other parts of the web page.
 #When looking up the Question answers, I collaborated with [[user:zvanysse| Zach Van Ysseldyk]] to inspect the resources on the page and decide which were referring to alienate pages and which were just "Google" markers. Next, I looked to find different "identifiers" on the web page, specifically filenames, paths and URLs.
 #When looking to find just the answers, I first focused on getting rid of the more "extra" code. I began by deleting the text before and after the genetic code. Then I focused on getting rid of the "stuff" in between the brackets. After I looked to separate the capital letters from one another and add "STOP" codons and "Met" codons.
@@ Line 52: / Line 50: @@
 #I worked with [[user:zvanysse| Zach Van Ysseldyk]] on the "curling" portion of the assignment. We collaborated on how the "curl" command works and what to look out for when computing the commands in the terminal.
 #I reached out to [[user:dondi| Dr. Dioniso]] about different referencing criteria, as well as, what an identifier is and how to find them.
 #'''While I worked with the people noted above, this individual journal entry was completed by me and not copied from another source.'''

@@ Line 30: / Line 30: @@
 #* Yes, the following link from the ExPASy page: "sib.css", "bas.css", "sib_print.css", "ga.js", and "dna_aa". The css sites refer to the "look and feel" of the website, such as buttons, formatting or colors. The js file refers to the actions computed once a button is pressed or a page is loaded. Finally the dna_aa file is a separate file that holds the data for the translation and where the code is accessed to perform the translation.<!-- Once a translation has been submitted these are the URLs referenced-->
 #Are there any identifiers in the ExPASy translation server’s responses? List them and state what you think they identify.
-#*
+#*action="/cgi-bin/translate/dna_aa" The "cgi" portion represents an identifier of an action that needs to be performed once the translate button is pushed.
 ===Just the Answers===

@@ Line 33: / Line 33: @@
 ===Just the Answers===
-  curl -d "pre_text=cgatggtacatggagtccagtagccgtagtgatgagatcgatgagctagc&submit=Submit" http://web.expasy.org/cgi-bin/translate/dna_aa | sed "1,47d" | sed "13,44d"
+  curl -d "pre_text=cgatggtacatggagtccagtagccgtagtgatgagatcgatgagctagc&submit=Submit" http://web.expasy.org/cgi-bin/translate/dna_aa | sed "1,47d" | sed "13,44d" | sed 's/<[^>]*>//g' | sed "2s/[A-Z]/& /g" | sed "4s/[A-Z]/& /g" | sed "6s/[A-Z]/& /g" | sed "8s/[A-Z]/& /g" | sed "10s/[A-Z]/& /g" | sed "12s/[A-Z]/& /g" | sed "s/-/STOP /g" | sed "s/M/Met/g"
@@ Line 40: / Line 49: @@
 #Also compared picture formatting to [[user:mbalducc|Mary Balducci's]] as it conveyed the correct title and formatting I wanted for my page.
 #I worked with [[user:zvanysse| Zach Van Ysseldyk]] on the "curling" portion of the assignment. We collaborated on how the "curl" command works and what to look out for when computing the commands in the terminal.
 #'''While I worked with the people noted above, this individual journal entry was completed by me and not copied from another source.'''

← Older revision		Revision as of 01:22, 18 September 2017
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	==Part I Picture Section==		==Part I Picture Section==
−	~~===Picture for "Hacking" LMU website===~~
−
−	~~[[File:Blair's Dog Lily.jpg\|300px\|thumb\|center\|Lily the best pug in the world]]~~

	===Screenshots===		===Screenshots===

@@ Line 31: / Line 31: @@
 ===Questions Regarding ExPASy===
 #Are there any links to other pages within the ExPASy translation server’s responses? List them and state where they go. (of course, if you aren’t sure, you can always go there with a web browser or curl)
-#* Yes, the following link from the ExPASy page: "sib.css", "bas.css", "sib_print.css", "ga.js", and "dna_aa". <!-- Once a translation has been submitted these are the URLs referenced-->
+#* Yes, the following link from the ExPASy page: "sib.css", "bas.css", "sib_print.css", "ga.js", and "dna_aa". The css sites refer to the "look and feel" of the website, such as buttons, formatting or colors. The js file refers to the actions computed once a button is pressed or a page is loaded. Finally the dna_aa file is a separate file that holds the data for the translation and where the code is accessed to perform the translation.<!-- Once a translation has been submitted these are the URLs referenced-->
 #Are there any identifiers in the ExPASy translation server’s responses? List them and state what you think they identify.
 #*

@@ Line 28: / Line 28: @@
   curl -d "pre_text=cgatggtacatagtagccgtagtgatgagatcgatgagctagc&submit=Submit" http://web.expasy.org/cgi-bin/translate/dna_aa <!-- (-d) represents the raw data selection. and the URL takes out the "action" section of the inspect element and allows the input to be delivered-->
 <!--https://curl.haxx.se/docs/manual.html used this website to explain how to extract data-->
 ==Acknowledgements==