Data Analysis - Revision history

Kdahlquist: /* Milestone 3: Complete Data Analysis of Dahlquist Lab Data for Visualization with GRNsight */ added links to week 10 instructions

2017-11-21T00:52:47Z

‎Milestone 3: Complete Data Analysis of Dahlquist Lab Data for Visualization with GRNsight: added links to week 10 instructions

Kdahlquist: laid out milestones

2017-11-07T22:03:09Z

laid out milestones

Dondi: Initial stub-out of data analysis guild page.

2017-11-07T16:22:56Z

Initial stub-out of data analysis guild page.

New page

{{GRNsight Gene Page Project Links}}

{{Under Construction}}

== Guild Members ==

* Page Design:
* Gene Database APIs:
* JASPAR API:
* Interaction and Integration:

== Milestones ==

The milestones do not necessarily correspond to particular weeks; instead they are sets of tasks grouped together.

{{Under Construction}}

{{GRNsight Gene Page Project Links}}

[[Category:Group Projects]]

@@ Line 27: / Line 27: @@
 *# Review the ANOVA results from [[Week 8]] for accuracy, making corrections if necessary.
 *# If corrections were made to the ANOVA results, re-running stem ([[Week 10]]).
-*# Using the [http://www.yeastract.com YEASTRACT Database] to determine which transcription factors are candidates for regulating the genes in a cluster from stem.
+*# Using the [http://www.yeastract.com YEASTRACT Database] to determine which transcription factors are candidates for regulating the genes in a cluster from stem (part of [[Week_10#Using_YEASTRACT_to_Infer_which_Transcription_Factors_Regulate_a_Cluster_of_Genes | Week 10]] that we postponed.
-*# Using the [http://www.yeastract.com YEASTRACT Database] to develop a candidate gene regulatory network.
+*# Using the [http://www.yeastract.com YEASTRACT Database] to develop a candidate gene regulatory network (part of [[Week_10#Visualizing_Your_Gene_Regulatory_Networks_with_GRNsight | Week 10]] that we postponed).
-*# Using the [http://kdahlquist.github.io/GRNmap/ GRNmap] software to model the gene regulatory network.
+*# Using the [http://kdahlquist.github.io/GRNmap/ GRNmap] software to model the gene regulatory network (confer with Dr. Dahlquist when you are ready for this).
 *# Visualizing the results with [http://dondi.github.io/GRNsight/ GRNsight].
 * As the end-user of the GRNsight software, the Data Analysts will provide feedback to the QAs and Coders about the usability of the new features.

@@ Line 1: / Line 1: @@
 {{GRNsight Gene Page Project Links}}
-{{Under Construction}}
+GRNsight is a web application and service for visualizing models of gene regulatory networks.  The role of the Data Analyst will be to complete the analysis of the Dahlquist Lab microarray dataset that was begun in the [[Week 8]] and [[Week 10]] assignments so that new insights can be gleaned by visualizing the data with GRNsight.  The Data Analysts are the end-users of the software, ultimately determining if the new features are useful to them in their biological interpretation of the cold shock experiments.
 == Guild Members ==
-* Page Design:
+* Page Design: Mary (dCIN5 dataset)
-* Gene Database APIs:
+* Gene Database APIs: Dina (dGLN3 dataset)
-* JASPAR API:
+* JASPAR API: Antonio (dZAP1 dataset)
-* Interaction and Integration:
+* Interaction and Integration: Emma (wild type dataset)
 == Milestones ==
@@ Line 14: / Line 14: @@
 The milestones do not necessarily correspond to particular weeks; instead they are sets of tasks grouped together.
-{{Under Construction}}
+=== Milestone 1: Annotated Bibliography ===
 {{GRNsight Gene Page Project Links}}
 [[Category:Group Projects]]