Dbashour Week 11 - Revision history

Dbashour: added template

2017-11-14T07:40:50Z

added template

Dbashour: added acknowledgements and references

2017-11-14T07:05:56Z

added acknowledgements and references

Dbashour: added search on 3 articles

2017-11-14T06:56:39Z

added search on 3 articles

Dbashour: syntax fix

2017-11-14T03:16:50Z

syntax fix

Dbashour: added keyword and advanced search functions

2017-11-14T03:11:32Z

added keyword and advanced search functions

Dbashour: /* Annotated Bibliography */ syntax fix

2017-11-14T00:08:38Z

‎Annotated Bibliography: syntax fix

Dbashour: inserted both articles used for final paper

2017-11-14T00:07:55Z

inserted both articles used for final paper

Dbashour: /* Annotated Bibliography */ syntax fix

2017-11-13T23:12:43Z

‎Annotated Bibliography: syntax fix

Dbashour: /* Annotated Bibliography */ syntax fix

2017-11-13T23:09:21Z

‎Annotated Bibliography: syntax fix

Dbashour: added second article

2017-11-13T23:06:51Z

added second article

← Older revision		Revision as of 07:40, 14 November 2017
Line 59:		Line 59:
	Murata et. al.(2006). Genome-wide expression analysis of yeast response during exposure to 4 C. Extremophiles, 10(2), 117-128. <br>		Murata et. al.(2006). Genome-wide expression analysis of yeast response during exposure to 4 C. Extremophiles, 10(2), 117-128. <br>
	Sahara, T., Goda, T., & Ohgiya, S. (2002). Comprehensive expression analysis of time-dependent genetic responses in yeast cells to low temperature. Journal of Biological Chemistry, 277(51), 50015-50021. <br>		Sahara, T., Goda, T., & Ohgiya, S. (2002). Comprehensive expression analysis of time-dependent genetic responses in yeast cells to low temperature. Journal of Biological Chemistry, 277(51), 50015-50021. <br>
		+
		+	{{template:dbashour}}

@@ Line 1: / Line 1: @@
-==Annotated Bibliography==
+==Electronic Notebook==
 #Murata et. al.(2006). Genome-wide expression analysis of yeast response during exposure to 4 C. Extremophiles, 10(2), 117-128.
@@ Line 18: / Line 19: @@
 #* Availability: Open Access on the day of acceptance, in print and online
-==PubMed, Google Scholar, and Web of Science Analyses==
+===PubMed, Google Scholar, and Web of Science Analyses===
 # Keyword search:
@@ Line 38: / Line 39: @@
 #** I used the advanced search option where I narrowed the search down by topic, then specifying for only articles, then specifying for articles in english. This left me with 15 results.
-== Prospective search on 3 articles==
+===Prospective search on 3 articles===
 # Aguilera, J., Randez-Gil, F., & Prieto, J.A. (2007).  Cold Response in Saccharomyces cerevisiae:  New Functions for Old Mechanisms.  FEMS Microbiological Reviews,  31, 327–341.  doi: 10.1111/j.1574-6976.2007.00066.x
 #* There are 144 cited references.
@@ Line 46: / Line 47: @@
 #* 108 articles cite this article.
 # Thieringer, H.A., Jones, P.G.,& Inouye, M. (1998).  Cold shock and adaptation.  BioEssays, 20, 49–57.  doi: 10.1002/(SICI)1521-1878(199801)20:1<49::AID-BIES8>3.0.CO;2-N
-#* How many articles does this article cite?
+#* This article has 76 cited references.
-#* How many articles cite this article?
+#* 258 articles cite this article.

@@ Line 38: / Line 38: @@
 #** I used the advanced search option where I narrowed the search down by topic, then specifying for only articles, then specifying for articles in english. This left me with 15 results.
-== Prospective search on 3 articles:
+== Prospective search on 3 articles==
 # Aguilera, J., Randez-Gil, F., & Prieto, J.A. (2007).  Cold Response in Saccharomyces cerevisiae:  New Functions for Old Mechanisms.  FEMS Microbiological Reviews,  31, 327–341.  doi: 10.1111/j.1574-6976.2007.00066.x
-#* How many articles does this article cite?
+#* There are 144 cited references.
-#* How many articles cite this article?
+#* 77 articles cite this article.
 #Al-Fageeh, M.B. & Smales, C.M. (2006).  Control and Regulation of the Cellular Responses to Cold Shock:  the Responses in Yeast and Mammalian Systems.  Biochemical Journal, 397, 247–259.  doi:  10.1042/BJ20060166
-#* How many articles does this article cite?
+#* This article has 125 cited references.
-#* How many articles cite this article?
+#* 108 articles cite this article.
 # Thieringer, H.A., Jones, P.G.,& Inouye, M. (1998).  Cold shock and adaptation.  BioEssays, 20, 49–57.  doi: 10.1002/(SICI)1521-1878(199801)20:1<49::AID-BIES8>3.0.CO;2-N
 #* How many articles does this article cite?
 #* How many articles cite this article?

@@ Line 38: / Line 38: @@
 #** I used the advanced search option where I narrowed the search down by topic, then specifying for only articles, then specifying for articles in english. This left me with 15 results.
-#** Perform a prospective search on the following three review articles in Web of Science and answer the following:
+== Prospective search on 3 articles:
-#*** Aguilera, J., Randez-Gil, F., & Prieto, J.A. (2007).  Cold Response in Saccharomyces cerevisiae:  New Functions for Old Mechanisms.  FEMS Microbiological Reviews,  31, 327–341.  doi: 10.1111/j.1574-6976.2007.00066.x
+# Aguilera, J., Randez-Gil, F., & Prieto, J.A. (2007).  Cold Response in Saccharomyces cerevisiae:  New Functions for Old Mechanisms.  FEMS Microbiological Reviews,  31, 327–341.  doi: 10.1111/j.1574-6976.2007.00066.x
-#**** How many articles does this article cite?
+#* How many articles does this article cite?
-#**** How many articles cite this article?
+#* How many articles cite this article?
-#*** Al-Fageeh, M.B. & Smales, C.M. (2006).  Control and Regulation of the Cellular Responses to Cold Shock:  the Responses in Yeast and Mammalian Systems.  Biochemical Journal, 397, 247–259.  doi:  10.1042/BJ20060166
+#Al-Fageeh, M.B. & Smales, C.M. (2006).  Control and Regulation of the Cellular Responses to Cold Shock:  the Responses in Yeast and Mammalian Systems.  Biochemical Journal, 397, 247–259.  doi:  10.1042/BJ20060166
-#**** How many articles does this article cite?
+#* How many articles does this article cite?
-#**** How many articles cite this article?
+#* How many articles cite this article?
-#*** Thieringer, H.A., Jones, P.G.,& Inouye, M. (1998).  Cold shock and adaptation.  BioEssays, 20, 49–57.  doi: 10.1002/(SICI)1521-1878(199801)20:1<49::AID-BIES8>3.0.CO;2-N
+# Thieringer, H.A., Jones, P.G.,& Inouye, M. (1998).  Cold shock and adaptation.  BioEssays, 20, 49–57.  doi: 10.1002/(SICI)1521-1878(199801)20:1<49::AID-BIES8>3.0.CO;2-N
-#**** How many articles does this article cite?
+#* How many articles does this article cite?
-#**** How many articles cite this article?
+#* How many articles cite this article?

@@ Line 1: / Line 1: @@
 ==Annotated Bibliography==
 #Murata et. al.(2006). Genome-wide expression analysis of yeast response during exposure to 4 C. Extremophiles, 10(2), 117-128.
 #* Link to PubMed Abstract: https://www.ncbi.nlm.nih.gov/pubmed/16254683
-#* Link to PubMed Central:
+#* Link to PubMed Central: N/A
 #* Link to Publisher's full text: https://link.springer.com/article/10.1007/s00792-005-0480-1#citeas
 #* Link to Publisher's PDF: https://link.springer.com/content/pdf/10.1007%2Fs00792-005-0480-1.pdf
@@ Line 12: / Line 11: @@
 #Sahara, T., Goda, T., & Ohgiya, S. (2002). Comprehensive expression analysis of time-dependent genetic responses in yeast cells to low temperature. Journal of Biological Chemistry, 277(51), 50015-50021.
 #* Link to PubMed Abstract: https://www.ncbi.nlm.nih.gov/pubmed/12379644?dopt=Abstract
-#* Link to PubMed Central:
+#* Link to PubMed Central: N/A
 #* Link to Publisher's full text: http://www.jbc.org/content/277/51/50015.long
 #* Link to Publisher's PDF: http://www.jbc.org/content/277/51/50015.full.pdf
@@ Line 21: / Line 20: @@
 ==PubMed, Google Scholar, and Web of Science Analyses==
-##** PubMed
+# Keyword search:
-#*** What original keyword(s) did you use?  How many results did you get?
+#* PubMed
-#*** Which terms in which combinations were most useful to narrow down the search?  How many results did you get after narrowing the search?
+#** I used the keywords "Saccharomyces cerevisiae" and "cold shock" got 134 results.
-#** Google Scholar
+#** Rearranging the terms did not change the number of results, but in order to narrow the search, I added the search term "microarray" which yielded 6 results.
-#*** What original keyword(s) did you use?  How many results did you get?
+#* Google Scholar
-#*** Which terms in which combinations were most useful to narrow down the search?  How many results did you get after narrowing the search?
+#** I used the keywords "Saccharomyces cerevisiae", "cold shock", and "microarray" and got 15,500 results.
-#** Web of Science
+#** All of the terms were useful in this case. When rearranged in different orders, the terms still yielded the same number of results.
-#*** What original keyword(s) did you use?  How many results did you get?
+#* Web of Science
-#*** Which terms in which combinations were most useful to narrow down the search?  How many results did you get after narrowing the search?
+#** I used the keywords "Saccharomyces cerevisiae" and "cold shock" and got 200 results.
-#* Use the advanced search functions for each of these three databases/tools and answer the following:
+#** In order to narrow down the search, I used the "search within results for..." function and added the term "microarray" and this left me with 15 results to choose from. Choosing these words in different orders did not make a difference.
-#** PubMed
+# Advanced search functions for each of these three databases/tools and answer the following:
-#*** Which advanced search functions were most useful to narrow down the search?  How many results did you get?
+#* PubMed
-#** Google Scholar
+#** Because my previous search with just the keywords yielded a small list, narrowing the search did not do anything. I used the advance search option to specify the publication date to be between 2000-2017 and yielded the same 6 results.
-#*** Which advanced search functions were most useful to narrow down the search?  How many results did you get?
+#* Google Scholar
-#** Web of Science
+#** Using the advanced search function, I was not able to narrow down the search that well with google scholar. The only one that yielded a different number of results was narrowing the search to be within the dates of 2000-2017. This gave me 14,800 results.
-#*** Which advanced search functions were most useful to narrow down the search?  How many results did you get?
+#* Web of Science
 #** Perform a prospective search on the following three review articles in Web of Science and answer the following:

@@ Line 10: / Line 10: @@
 #* Organization of publisher: Springer-Verlag in Extremophiles
 #* Availability: Online and in print, LMU pays a subscription fee for this journal
 #Sahara, T., Goda, T., & Ohgiya, S. (2002). Comprehensive expression analysis of time-dependent genetic responses in yeast cells to low temperature. Journal of Biological Chemistry, 277(51), 50015-50021.
 #* Link to PubMed Abstract: https://www.ncbi.nlm.nih.gov/pubmed/12379644?dopt=Abstract
@@ Line 18: / Line 17: @@
 #* Copyright: 2002 by The Journal of Biological Chemistry
 #* Organization of publisher: American Society for Biochemistry and Molecular Biology
 #* Availability: Open Access on the day of acceptance, in print and online
 ==PubMed, Google Scholar, and Web of Science Analyses==

@@ Line 3: / Line 3: @@
 #Murata et. al.(2006). Genome-wide expression analysis of yeast response during exposure to 4 C. Extremophiles, 10(2), 117-128.
-#* http://sq4ya5rf2q.search.serialssolutions.com/?url_ver=Z39.88-2004&url_ctx_fmt=info:ofi/fmt:kev:mtx:ctx&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.atitle=Genome-wide%20expression%20analysis%20of%20yeast%20response%20during%20exposure%20to%204%20degrees%20C&rft.aufirst=Y&rft.aulast=Murata&rft.date=2006&rft.epage=128&rft.genre=article&rft.issn=1431-0651&rft.issue=2&rft.jtitle=EXTREMOPHILES&rft.pages=117-128&rft.spage=117&rft.stitle=EXTREMOPHILES&rft.volume=10&rfr_id=info:sid/www.isinet.com:WoK:WOS&rft.au=Homma%2C%20T&rft.au=Kitagawa%2C%20E&rft.au=Momose%2C%20Y&rft.au=Sato%2C%20MS&rft_id=info:pmid/16254683&rft_id=info:doi/10%2E1007%2Fs00792-005-0480-1 -----link to original article
+#* Link to PubMed Abstract: https://www.ncbi.nlm.nih.gov/pubmed/16254683
-#* https://apps.webofknowledge.com/full_record.do?product=WOS&search_mode=GeneralSearch&qid=4&SID=2CCfLt1ZSeZT5hBNIyR&page=1&doc=6&cacheurlFromRightClick=no -----link to web of science
+#* Link to PubMed Central:
-#* https://scholar.google.com/scholar_lookup?doi=10%2E1007%2Fs00792-005-0480-1&issn=1431-0651&issue=2&journal=EXTREMOPHILES&hl=en&pages=117-128&pmid=16254683&title=Genome-wide%20expression%20analysis%20of%20yeast%20response%20during%20exposure%20to%204%20degrees%20C&author=Y%20Murata&publication_year=2006&volume=10 --------link to google scholar
+#* Link to Publisher's full text: https://link.springer.com/article/10.1007/s00792-005-0480-1#citeas
-#* https://s3.amazonaws.com/academia.edu.documents/46987997/s00792-005-0480-120160703-561-uj764b.pdf?AWSAccessKeyId=AKIAIWOWYYGZ2Y53UL3A&Expires=1510614207&Signature=rgFQic%2FhoIX6%2Fp5crBgtQs94ESU%3D&response-content-disposition=inline%3B%20filename%3DGenome-wide_expression_analysis_of_yeast.pdf -----link to PDF
+#* Link to Publisher's PDF: https://link.springer.com/content/pdf/10.1007%2Fs00792-005-0480-1.pdf
-# insert APA
+#* Copyright: 2005 by Springer-Verlag
-#* http://www.jbc.org/content/277/51/50015.long ----link to full text publisher
+#* Organization of publisher: Springer-Verlag in Extremophiles
-#* http://www.jbc.org/content/277/51/50015.full.pdf-----link to full text PDF publisher
+#* Availability: Online and in print, LMU pays a subscription fee for this journal
-#* https://www.ncbi.nlm.nih.gov/pubmed/12379644?dopt=Abstract -----pubmed abstract

@@ Line 2: / Line 2: @@
-*Murata et. al.(2006). Genome-wide expression analysis of yeast response during exposure to 4 C. Extremophiles, 10(2), 117-128.
+#Murata et. al.(2006). Genome-wide expression analysis of yeast response during exposure to 4 C. Extremophiles, 10(2), 117-128.
-**http://sq4ya5rf2q.search.serialssolutions.com/?url_ver=Z39.88-2004&url_ctx_fmt=info:ofi/fmt:kev:mtx:ctx&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.atitle=Genome-wide%20expression%20analysis%20of%20yeast%20response%20during%20exposure%20to%204%20degrees%20C&rft.aufirst=Y&rft.aulast=Murata&rft.date=2006&rft.epage=128&rft.genre=article&rft.issn=1431-0651&rft.issue=2&rft.jtitle=EXTREMOPHILES&rft.pages=117-128&rft.spage=117&rft.stitle=EXTREMOPHILES&rft.volume=10&rfr_id=info:sid/www.isinet.com:WoK:WOS&rft.au=Homma%2C%20T&rft.au=Kitagawa%2C%20E&rft.au=Momose%2C%20Y&rft.au=Sato%2C%20MS&rft_id=info:pmid/16254683&rft_id=info:doi/10%2E1007%2Fs00792-005-0480-1 -----link to original article
+#*http://sq4ya5rf2q.search.serialssolutions.com/?url_ver=Z39.88-2004&url_ctx_fmt=info:ofi/fmt:kev:mtx:ctx&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.atitle=Genome-wide%20expression%20analysis%20of%20yeast%20response%20during%20exposure%20to%204%20degrees%20C&rft.aufirst=Y&rft.aulast=Murata&rft.date=2006&rft.epage=128&rft.genre=article&rft.issn=1431-0651&rft.issue=2&rft.jtitle=EXTREMOPHILES&rft.pages=117-128&rft.spage=117&rft.stitle=EXTREMOPHILES&rft.volume=10&rfr_id=info:sid/www.isinet.com:WoK:WOS&rft.au=Homma%2C%20T&rft.au=Kitagawa%2C%20E&rft.au=Momose%2C%20Y&rft.au=Sato%2C%20MS&rft_id=info:pmid/16254683&rft_id=info:doi/10%2E1007%2Fs00792-005-0480-1 -----link to original article
-**https://apps.webofknowledge.com/full_record.do?product=WOS&search_mode=GeneralSearch&qid=4&SID=2CCfLt1ZSeZT5hBNIyR&page=1&doc=6&cacheurlFromRightClick=no -----link to web of science
+#*https://apps.webofknowledge.com/full_record.do?product=WOS&search_mode=GeneralSearch&qid=4&SID=2CCfLt1ZSeZT5hBNIyR&page=1&doc=6&cacheurlFromRightClick=no -----link to web of science
-**https://scholar.google.com/scholar_lookup?doi=10%2E1007%2Fs00792-005-0480-1&issn=1431-0651&issue=2&journal=EXTREMOPHILES&hl=en&pages=117-128&pmid=16254683&title=Genome-wide%20expression%20analysis%20of%20yeast%20response%20during%20exposure%20to%204%20degrees%20C&author=Y%20Murata&publication_year=2006&volume=10 --------link to google scholar
+#*https://scholar.google.com/scholar_lookup?doi=10%2E1007%2Fs00792-005-0480-1&issn=1431-0651&issue=2&journal=EXTREMOPHILES&hl=en&pages=117-128&pmid=16254683&title=Genome-wide%20expression%20analysis%20of%20yeast%20response%20during%20exposure%20to%204%20degrees%20C&author=Y%20Murata&publication_year=2006&volume=10 --------link to google scholar
-**https://s3.amazonaws.com/academia.edu.documents/46987997/s00792-005-0480-120160703-561-uj764b.pdf?AWSAccessKeyId=AKIAIWOWYYGZ2Y53UL3A&Expires=1510614207&Signature=rgFQic%2FhoIX6%2Fp5crBgtQs94ESU%3D&response-content-disposition=inline%3B%20filename%3DGenome-wide_expression_analysis_of_yeast.pdf -----link to PDF
+#*https://s3.amazonaws.com/academia.edu.documents/46987997/s00792-005-0480-120160703-561-uj764b.pdf?AWSAccessKeyId=AKIAIWOWYYGZ2Y53UL3A&Expires=1510614207&Signature=rgFQic%2FhoIX6%2Fp5crBgtQs94ESU%3D&response-content-disposition=inline%3B%20filename%3DGenome-wide_expression_analysis_of_yeast.pdf -----link to PDF
 *http://www.jbc.org/content/277/51/50015.long ----link to full text publisher
-**http://www.jbc.org/content/277/51/50015.full.pdf-----link to full text PDF publisher
+#*http://www.jbc.org/content/277/51/50015.long ----link to full text publisher
-**https://www.ncbi.nlm.nih.gov/pubmed/12379644?dopt=Abstract -----pubmed abstract
+#*http://www.jbc.org/content/277/51/50015.full.pdf-----link to full text PDF publisher