Dbashour week 4 - Revision history

Dbashour: updated new zip file

2017-10-17T04:47:16Z

updated new zip file

Dbashour: syntax fix

2017-09-26T21:43:14Z

syntax fix

Dbashour: added template

2017-09-26T07:09:35Z

added template

Dbashour: added acknowledgements

2017-09-26T07:08:54Z

added acknowledgements

Dbashour: syntax fix

2017-09-26T07:01:24Z

syntax fix

Dbashour: updated gene ID location

2017-09-26T06:59:39Z

updated gene ID location

Dbashour: added references and introduction

2017-09-26T06:53:54Z

added references and introduction

Dbashour: created week 4 journal entry page

2017-09-26T05:16:34Z

created week 4 journal entry page

New page

@@ Line 16: / Line 16: @@
 ===Final Product===
-[[Media:Lopez-bashoura.zip|Here]] is the finished file.
+[[Media:adh1.zip|Here]] is the finished file.
 ===Acknowledgements===

@@ Line 17: / Line 17: @@
 ===Final Product===
 [[Media:Lopez-bashoura.zip|Here]] is the finished file.
 ===Acknowledgements===
 I worked with my partner [[User:Johnllopez616 | John Lopez]] in class. We decided on our gene and decided how we wanted this organized. On Sunday we FaceTimed to construct the website, where we finished most of it. On Monday we met to finalize everything and submitted. For the project, I did all the research needed and wrote the text, while John worked on the HTML. While I worked with the people noted above, this individual journal entry was completed by me and not copied from another source.
 ===References===

← Older revision		Revision as of 07:09, 26 September 2017
Line 33:		Line 33:
	*''Using "Tables"''. Bootstrap. Retrieved September 24, 2017, from http://getbootstrap.com/docs/4.0/content/tables/		*''Using "Tables"''. Bootstrap. Retrieved September 24, 2017, from http://getbootstrap.com/docs/4.0/content/tables/
	*LMU BioDB 2017. (2017). Week 1. Retrieved September 24, 2017, from https://xmlpipedb.cs.lmu.edu/biodb/fall2017/index.php/Week_4		*LMU BioDB 2017. (2017). Week 1. Retrieved September 24, 2017, from https://xmlpipedb.cs.lmu.edu/biodb/fall2017/index.php/Week_4
		+
		+	{{template:dbashour}}

@@ Line 1: / Line 1: @@
-==Electronic Journal==
+===Electronic Journal===
 My partner [[User:Johnllopez616 | John Lopez]] and I worked together to chose "our favorite gene". We began by exploring the SDG website and decided on the gene ADH1 because of its role in the fermentation process of alcohol. We chose to split up the work based on our individual domains so I was in charge of gathering the research while he was in charge of creating the website.
-We met over FaceTime to collaborate our ideas. We decided to use an accordion style look for the page where each section contained a different emphasis of the gene.
+We met over FaceTime on September 24th to collaborate our ideas. We decided to use an accordion style look for the page where each section contained a different emphasis of the gene.
 While John set up the page, I began to do research on our chosen gene. I started by visiting the SGD site and gathering as much information as I could from that one site. I found the standard name, the systematic name, the name description, and the gene ID from this website. Once this information was obtained, I sent it over to John to add to the template he created.
-In order to get the gene ID's, I looked on all four pages (SGD, NCBI, Ensembl, and UniProt) and found what the gene ID's were, which were usually listed at the very top of the page next to the gene name. Once I got this information, I then
+In order to get the gene ID's, I looked on all four pages (SGD, NCBI, Ensembl, and UniProt) and found what the gene ID's were, which were usually listed at the very top of the page next to the gene name. Once I got this information, I then obtained the DNA and Protein sequences from Ensembl, where it was clearly listed, even providing information as to which DNA sequence corresponded to which Protein sequence.
 ===References===
@@ Line 23: / Line 33: @@
   *''Using "Tables"''. Bootstrap. Retrieved September 24, 2017, from  http://getbootstrap.com/docs/4.0/content/tables/
   *LMU BioDB 2017. (2017). Week 1. Retrieved September 24, 2017, from https://xmlpipedb.cs.lmu.edu/biodb/fall2017/index.php/Week_4

@@ Line 7: / Line 7: @@
 While John set up the page, I began to do research on our chosen gene. I started by visiting the SGD site and gathering as much information as I could from that one site. I found the standard name, the systematic name, the name description, and the gene ID from this website. Once this information was obtained, I sent it over to John to add to the template he created.
-In order to get the gene ID's, I looked on all four pages (SGD, NCBI, Ensembl, and UniProt) and found what the gene ID's were, which were usually listed at the very top of the page next to the gene name.
+In order to get the gene ID's, I looked on all four pages (SGD, NCBI, Ensembl, and UniProt) and found what the gene ID's were, which were usually listed at the very top of the page next to the gene name. Once I got this information, I then
@@ Line 24: / Line 23: @@
   *''Using "Tables"''. Bootstrap. Retrieved September 24, 2017, from  http://getbootstrap.com/docs/4.0/content/tables/
   *LMU BioDB 2017. (2017). Week 1. Retrieved September 24, 2017, from https://xmlpipedb.cs.lmu.edu/biodb/fall2017/index.php/Week_4

← Older revision		Revision as of 06:59, 26 September 2017
Line 1:		Line 1:
	==Electronic Journal==		==Electronic Journal==

−	My partner [[User:Johnllopez616 \| John Lopez]] and I worked together to chose "our favorite gene". We began by exploring the SDG website and decided on the gene ADH1 because of its role in the fermentation process of alcohol.	+	My partner [[User:Johnllopez616 \| John Lopez]] and I worked together to chose "our favorite gene". We began by exploring the SDG website and decided on the gene ADH1 because of its role in the fermentation process of alcohol. We chose to split up the work based on our individual domains so I was in charge of gathering the research while he was in charge of creating the website.
		+
		+	We met over FaceTime to collaborate our ideas. We decided to use an accordion style look for the page where each section contained a different emphasis of the gene.
		+
		+	While John set up the page, I began to do research on our chosen gene. I started by visiting the SGD site and gathering as much information as I could from that one site. I found the standard name, the systematic name, the name description, and the gene ID from this website. Once this information was obtained, I sent it over to John to add to the template he created.
		+
		+	In order to get the gene ID's, I looked on all four pages (SGD, NCBI, Ensembl, and UniProt) and found what the gene ID's were, which were usually listed at the very top of the page next to the gene name.

← Older revision	Revision as of 06:53, 26 September 2017
Line 1:	Line 1:
	+	==Electronic Journal==

	+	My partner [[User:Johnllopez616 \| John Lopez]] and I worked together to chose "our favorite gene". We began by exploring the SDG website and decided on the gene ADH1 because of its role in the fermentation process of alcohol.
	+
	+
	+
	+
	+
	+
	+	===References===
	+	*Emw. (2009, December 15). ''Protein ADH5 PDB 1m6h''. Retrieved from https://upload.wikimedia.org/wikipedia/commons/a/a5/Protein_ADH5_PDB_1m6h.png
	+	*''ADH1''. Saccharomyces Genome Database. Retrieved September 24, 2017, from https://www.yeastgenome.org/locus/S000005446#interaction
	+	*''ADH1 alcohol dehydrogenase ADH1 [Saccharomyces cerevisiae S288C] – Gene'''. NCBI. Retrieved September 24, 2017, from https://www.ncbi.nlm.nih.gov/gene/854068#genomic-context
	+	*''Transcript: ADH1''. Ensembl. Retrieved September 24, 2017, from https://www.ensembl.org/Saccharomyces_cerevisiae/Transcript/Summary?db=core%3Bg
	+	*''Alcohol dehydrogenase 1''. UniProt. Retrieved September 24, 2017, from http://www.uniprot.org/uniprot/P00330
	+	*''Using "Collapse"''. Bootstrap. Retrieved September 24, 2017, from https://getbootstrap.com/docs/4.0/components/collapse/
	+	*''Using "Navbar"''. Bootstrap. Retrieved September 24, 2017, from https://v4-alpha.getbootstrap.com/components/navbar/
	+	*''Using "Tables"''. Bootstrap. Retrieved September 24, 2017, from http://getbootstrap.com/docs/4.0/content/tables/
	+	*LMU BioDB 2017. (2017). Week 1. Retrieved September 24, 2017, from https://xmlpipedb.cs.lmu.edu/biodb/fall2017/index.php/Week_4