Ebachour Week 9 - Revision history

Ebachour: Finished the assignment

2017-10-31T05:01:15Z

Finished the assignment

Ebachour: Adding the tests

2017-10-31T04:47:14Z

Adding the tests

Ebachour: Added general format for this assignment

2017-10-31T04:24:54Z

Added general format for this assignment

Ebachour: Adding the discovered code

2017-10-30T23:13:00Z

Adding the discovered code

New page

<pre>
gene_name=[ENTER GENE NAME HERE]

gene_id=$(curl -L "http://www.uniprot.org/uniprot/?query=559292+$gene_name&sort=score" | grep -o -P '(?<=tbody><tr id=").*(?=\" class=" entry s)')

curl -L "http://uniprot.org/uniprot/$gene_id.xml"
</pre>

@@ Line 1: / Line 1: @@
 =Electronic Journal=
 =GRNsight Test Results=
@@ Line 23: / Line 34: @@
 =API=
+Upon determining how to go from a gene name/symbol to that gene’s individual data record (as shown in the [[Week 7]] [[Media:Ajax-starter.zip|''ajax-starter'']] files), write up this process as a reproducible “recipe” in your electronic journal. In general, this recipe will consist of:
+* The URLs to access in order to retrieve the desired data
 <pre>
 gene_name=[ENTER GENE NAME HERE]
@@ Line 32: / Line 58: @@
 curl -L "http://uniprot.org/uniprot/$gene_id.xml"
 </pre>
+'''Explanation above in the electronic journal'''
 =Acknowledgements=
 I worked with my homework partner [[User:kwrigh35 | Katie Wright]] in class. We also met face-to-face one time outside of class. We texted outside of class and met to work on the API part of teh assignment together.<br>

← Older revision		Revision as of 04:47, 31 October 2017
Line 1:		Line 1:
		+	=Electronic Journal=
		+
		+	=GRNsight Test Results=
		+	[[File:GRNsight_Viewport_Fail.JPG\|600px\|thumb\|right\|]]
		+	We were tasked with testing the viewport size based on the test structure given in [[media:GRNsight_Testing-Viewport_Size.pdf \| this PDF]].<br>
		+	Test 1: '''PASS'''<br>
		+	Test 2: '''PASS'''<br>
		+	Test 3: '''PASS'''<br>
		+	Test 4: '''PASS'''<br>
		+	Test 5: '''PASS'''<br>
		+	Test 6: '''PASS'''<br>
		+	Test 7: '''PASS'''<br>
		+	Test 8: '''PASS'''<br>
		+	Test 9: '''PASS'''<br>
		+	Test 10: '''PASS'''<br>
		+	Test 11: '''PASS'''<br>
		+	Test 12: '''PASS'''<br>
		+	Test 13: '''FAIL'''<br>
		+	Test 14: '''FAIL'''<br>
		+	Test 15: '''FAIL'''<br>
		+
		+	'''Test 13, 14, & 15 Fail Explanation''': These three tests failed because the viewport doesn't truly "Fit to Window" when you get to smaller screen sizes. For example, when looking at the screenshot on the right, you would notice that there is a scrollbar on the bottom of the window. If you were to make the window just slightly larger, then that scrollbar would go away. This is because although the "Fit to Window" feature properly fits to window for most larger window sizes, but when the window gets below a specific width, it ceases to adhere to the full width of the window.
		+
		+	=API=
		+
		+
	<pre>		<pre>
	gene_name=[ENTER GENE NAME HERE]		gene_name=[ENTER GENE NAME HERE]

← Older revision		Revision as of 04:24, 31 October 2017
Line 6:		Line 6:
	curl -L "http://uniprot.org/uniprot/$gene_id.xml"		curl -L "http://uniprot.org/uniprot/$gene_id.xml"
	</pre>		</pre>
		+
		+
		+	=Acknowledgements=
		+	I worked with my homework partner [[User:kwrigh35 \| Katie Wright]] in class. We also met face-to-face one time outside of class. We texted outside of class and met to work on the API part of teh assignment together.<br>
		+	'''While I worked with the people noted above, this individual journal entry was completed by me and not copied from another source.'''<br>
		+	[[User:Ebachour\|Ebachour]] ([[User talk:Ebachour\|talk]]) 21:24, 30 October 2017 (PDT)
		+
		+	=References=
		+	* LMU BioDB 2017. (2017). Week 9. Retrieved October 27, 2017, from https://xmlpipedb.cs.lmu.edu/biodb/fall2017/index.php/Week_9
		+
		+	{{Template:ebachour}}