Hhinsch Week 11 - Revision history

Hhinsch: added another acknowledgment of my team members

2017-11-14T06:34:34Z

added another acknowledgment of my team members

Hhinsch: fixed invocation of template

2017-11-14T06:29:15Z

fixed invocation of template

Hhinsch: fixed template, added links to data, and added references and acknowledgments

2017-11-14T06:28:19Z

fixed template, added links to data, and added references and acknowledgments

Hhinsch: finished bibliography entries

2017-11-14T06:16:45Z

finished bibliography entries

Hhinsch: added my second bibliography entry

2017-11-14T06:11:25Z

added my second bibliography entry

Hhinsch: fixed responses to the prospective web of science search

2017-11-14T05:40:54Z

fixed responses to the prospective web of science search

Hhinsch: added responses to my web of science perspective searches

2017-11-14T05:38:58Z

added responses to my web of science perspective searches

Hhinsch: saved one of the prospective web of science search results

2017-11-14T05:34:40Z

saved one of the prospective web of science search results

Hhinsch: added some of my responses to the query questions

2017-11-14T05:27:40Z

added some of my responses to the query questions

Hhinsch: saved first bibliography entry

2017-11-14T04:56:12Z

saved first bibliography entry

@@ Line 74: / Line 74: @@
 #Dr. Dahlquist helped the QA's and Data Analysts learn what to look for and how to navigate Web of Science.
 #I worked with [[User:Mbalducc|Mary Balducci]] over text and in class in order to complete the deliverables of this assignment.
 #While I worked with the people noted above, this individual journal entry was completed by me and not copied from another source.[[User:Hhinsch|Hhinsch]] ([[User talk:Hhinsch|talk]]) 22:28, 13 November 2017 (PST)
 ==References==
 #Web of Science. (2017). Retrieved November 13, 2017, from https://login.webofknowledge.com/error/Error?Error=IPError&PathInfo=%2F&RouterURL=https%3A%2F%2Fwww.webofknowledge.com%2F&Domain=.webofknowledge.com&Src=IP&Alias=WOK5

@@ Line 82: / Line 82: @@
 #Ando, A., Nakamura, T., Murata, Y., Takagi, H. and Shima, J. (2007), Identification and classification of genes required for tolerance to freeze–thaw stress revealed by genome-wide screening of Saccharomyces cerevisiae deletion strains. FEMS Yeast Research, 7: 244–253. doi:10.1111/j.1567-1364.2006.00162.x
 #Dahlquist, K. D., Fitzpatrick, B. G., Camacho, E. T., Entzminger, S. D., & Wanner, N. C. (2015). Parameter Estimation for Gene Regulatory Networks from Microarray Data: Cold Shock Response in Saccharomyces cerevisiae. Bulletin of Mathematical Biology, 77(8), 1457–1492. http://doi.org/10.1007/s11538-015-0092-6
-{{PageDesiigner}}
+{{Pagedesiigner}}
 {{hhinsch}}

@@ Line 1: / Line 1: @@
 ==Bibliography Notes==
-*The complete bibliographic reference in the APA style (see http://libguides.lmu.edu/content.php?pid=25618&sid=184708.  You will be using one of three formats, journal article from database (with DOI), journal article from database (no DOI) or journal article in print (no DOI).)
 * You must use these three databases/tools to find the references that you include in your bibliography:  PubMed, GoogleScholar, and Web of Science. Answer the following questions as part of your assignment:
 * Use a keyword search for the first three databases/tools and answer the following:
@@ Line 70: / Line 57: @@
 * Availability: Online
 * Did LMU pay a fee for this article: No
@@ Line 81: / Line 69: @@
 * Availability:  Online and in print
 * Did LMU pay a fee for this article: No
 ==Acknowledgments==
 ==References==
+#Web of Science. (2017). Retrieved November 13, 2017, from https://login.webofknowledge.com/error/Error?Error=IPError&PathInfo=%2F&RouterURL=https%3A%2F%2Fwww.webofknowledge.com%2F&Domain=.webofknowledge.com&Src=IP&Alias=WOK5
 {{PageDesiigner}}
 {{hhinsch}}

@@ Line 66: / Line 66: @@
 * Publisher Full Text (HTML):  https://link.springer.com/article/10.1007/s11538-015-0092-6
 * Publisher Full Text (PDF):  https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4636536/pdf/11538_2015_Article_92.pdf
-* Copyright: The Author(s) 2015. This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made.
+* Copyright: The Author(s) 2015. Open Access: This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made.
-* Publisher: Bulletin of Mathematical Biology
+* Publisher: Bulletin of Mathematical Biology(scientific society)
 * Availability: Online
 * Did LMU pay a fee for this article: No
@@ Line 77: / Line 77: @@
 * Publisher Full Text (HTML):  https://academic.oup.com/femsyr/article/7/2/244/616825?searchresult=1
 * Publisher Full Text (PDF):  http://onlinelibrary.wiley.com/doi/10.1111/j.1567-1364.2006.00162.x/epdf
-* Copyright:  Copyright © 2007, Oxford University Press; article has not always been free, but is now free to the public. You must ask permission from the publisher to use the article.
+* Copyright:  Copyright © 2007, Oxford University Press; Open Access after time has elapsed: This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. You must ask permission from the publisher to use the article.
-* Publisher:  Published by Oxford University Press
+* Publisher:  Published by Oxford University Press(respected open access organization)
 * Availability:  Online and in print
 * Did LMU pay a fee for this article: No

@@ Line 59: / Line 59: @@
 ==Bibliography==
-For example, see the bibliographic entry for Schade et al. (2004) below which is available both in print and online:
 Dahlquist, K. D., Fitzpatrick, B. G., Camacho, E. T., Entzminger, S. D., & Wanner, N. C. (2015). Parameter Estimation for Gene Regulatory Networks from Microarray Data: Cold Shock Response in Saccharomyces cerevisiae. Bulletin of Mathematical Biology, 77(8), 1457–1492. http://doi.org/10.1007/s11538-015-0092-6
@@ Line 72: / Line 72: @@
-Schade, B., Jansen, G., Whiteway, M., Entian, K.D., & Thomas, D.Y. (2004). Cold Adaptation in Budding Yeast.  ''Molecular Biology of the Cell'', 15, 5492-5502.  doi:  10.1091/mbc.E04-03-0167
+Ando, A., Nakamura, T., Murata, Y., Takagi, H. and Shima, J. (2007), Identification and classification of genes required for tolerance to freeze–thaw stress revealed by genome-wide screening of Saccharomyces cerevisiae deletion strains. FEMS Yeast Research, 7: 244–253. doi:10.1111/j.1567-1364.2006.00162.x
-* PubMed Abstract:  http://www.ncbi.nlm.nih.gov/pubmed/15483057
+* PubMed Abstract:  https://www.ncbi.nlm.nih.gov/pubmed/16989656
-* PubMed Central:  http://www.ncbi.nlm.nih.gov/pmc/articles/PMC532028/
+* PubMed Central:  N/A
-* Publisher Full Text (HTML):  http://www.molbiolcell.org/content/15/12/5492.long
+* Publisher Full Text (HTML):  https://academic.oup.com/femsyr/article/7/2/244/616825?searchresult=1
-* Publisher Full Text (PDF):  http://www.molbiolcell.org/content/15/12/5492.full.pdf+html
+* Publisher Full Text (PDF):  http://onlinelibrary.wiley.com/doi/10.1111/j.1567-1364.2006.00162.x/epdf
-* Copyright:  2004 by the American Society for Cell Biology (information found on PDF version of article); article is not Open Access, but is freely available 2 months after publication
+* Copyright:  Copyright © 2007, Oxford University Press; article has not always been free, but is now free to the public. You must ask permission from the publisher to use the article.
-* Publisher:  American Society for Cell Biology (scientific society)
+* Publisher:  Published by Oxford University Press
-* Availability:  in print and online
+* Availability:  Online and in print
-* Did LMU pay a fee for this article: no
+* Did LMU pay a fee for this article: No
 ==Acknowledgments==

@@ Line 49: / Line 49: @@
 *** Al-Fageeh, M.B. & Smales, C.M. (2006).  Control and Regulation of the Cellular Responses to Cold Shock:  the Responses in Yeast and Mammalian Systems.  Biochemical Journal, 397, 247–259.  doi:  10.1042/BJ20060166
 **** How many articles does this article cite?
-*****This article cites 125 references.
+*****This article cites 108 references.
 **** How many articles cite this article?
-*****108 articles cite this article.
+*****125 articles cite this article.
 *** Thieringer, H.A., Jones, P.G.,& Inouye, M. (1998).  Cold shock and adaptation.  BioEssays, 20, 49–57.  doi: 10.1002/(SICI)1521-1878(199801)20:1<49::AID-BIES8>3.0.CO;2-N
 **** How many articles does this article cite?
-*****This article cites 258 references.
+*****This article cites 76 references.
 **** How many articles cite this article?
-*****76 articles cite this article.
+*****258 articles cite this article.
 ==Bibliography==

@@ Line 18: / Line 18: @@
 ** PubMed
 *** What original keyword(s) did you use?  How many results did you get?
 *** Which terms in which combinations were most useful to narrow down the search?  How many results did you get after narrowing the search?
 ** Google Scholar
 *** What original keyword(s) did you use?  How many results did you get?
 *** Which terms in which combinations were most useful to narrow down the search?  How many results did you get after narrowing the search?
 ** Web of Science
 *** What original keyword(s) did you use?  How many results did you get?
 *** Which terms in which combinations were most useful to narrow down the search?  How many results did you get after narrowing the search?
 * Use the advanced search functions for each of these three databases/tools and answer the following:
 ** PubMed
 *** Which advanced search functions were most useful to narrow down the search?  How many results did you get?
 ** Google Scholar
 *** Which advanced search functions were most useful to narrow down the search?  How many results did you get?
 ** Web of Science
 *** Which advanced search functions were most useful to narrow down the search?  How many results did you get?
 ** Perform a prospective search on the following three review articles in Web of Science and answer the following:
 *** Aguilera, J., Randez-Gil, F., & Prieto, J.A. (2007).  Cold Response in Saccharomyces cerevisiae:  New Functions for Old Mechanisms.  FEMS Microbiological Reviews,  31, 327–341.  doi: 10.1111/j.1574-6976.2007.00066.x