Hhinsch Week 9 - Revision history

Hhinsch: added some notes to my api exploration

2017-10-31T06:54:07Z

added some notes to my api exploration

Hhinsch: added some notes to my electronic notebook

2017-10-31T06:50:41Z

added some notes to my electronic notebook

Hhinsch: added my electronic signature-almost forgot

2017-10-31T06:32:54Z

added my electronic signature-almost forgot

Hhinsch: added references

2017-10-30T23:51:44Z

added references

Hhinsch: fixed a typo

2017-10-30T23:45:33Z

fixed a typo

Hhinsch: added web service API exploration section

2017-10-30T23:44:51Z

added web service API exploration section

Hhinsch: added an electronic notebook section for week 9

2017-10-30T23:31:40Z

added an electronic notebook section for week 9

Hhinsch: added acknowledgments and references section

2017-10-30T21:56:44Z

added acknowledgments and references section

Hhinsch: fixed coding for the files i used

2017-10-30T04:14:21Z

fixed coding for the files i used

Hhinsch: edited the formatting of my page.

2017-10-30T04:09:40Z

edited the formatting of my page.

@@ Line 62: / Line 62: @@
 *Specific instructions on how to interpret the data returned by each URL so that you can extract exactly the information you need in order to proceed to the next step
 **If you copy the URL that is used to access the desired data and hit enter, your computer will download a .json file that can be easily read in a text editor. From here, it is easy to read the data that is provided. You can also use the computer's terminal to invoke the <code>curl https://yeastmine.yeastgenome.org/yeastmine/service/data/Gene?symbol=BRO1</code> command in order to retrieve the data in a text form. This is a little bit more difficult to read but it is entirely possible to do so if you have some basic knowledge of reading .json. I however would recommend that an individual retrieving this data should use the method for downloading the .json file of the data so it is a bit easier to read.
 ==Electronic Notebook==

@@ Line 77: / Line 77: @@
 *By opening the download in a text editor, it easily provides the data for a specific gene.
 *I found that I can use any gene symbol to find the data for any specific gene simply by using the <code>curl https://yeastmine.yeastgenome.org/yeastmine/service/data/Gene?symbol=</code> template.
 ==Acknowledgments==
 #[[User:johnllopez616|John Lopez]], [[User:dbashour|Dina Bashoura]], [[User:Simonwro120|Simon Wroblewski]] and I worked together in the lab in order to complete the deliverables of this assignment. [[User:johnllopez616|John Lopez]] and I worked together in person more than once to complete the deiverables of this assignment.

@@ Line 78: / Line 78: @@
 *I found that I can use any gene symbol to find the data for any specific gene simply by using the <code>curl https://yeastmine.yeastgenome.org/yeastmine/service/data/Gene?symbol=</code> template.
 ==Acknowledgments==
-#[[User:johnllopez616|John Lopez]], [[User:dbashour|Dina Bashoura]], [[User:Simonwro120|Simon Wroblewski]] and I worked together in order to complete the deliverables of this assignment. [[User:johnllopez616|John Lopez]] and I worked together more than once to complete the deiverables of this assignment.
+#[[User:johnllopez616|John Lopez]], [[User:dbashour|Dina Bashoura]], [[User:Simonwro120|Simon Wroblewski]] and I worked together in the lab in order to complete the deliverables of this assignment. [[User:johnllopez616|John Lopez]] and I worked together in person more than once to complete the deiverables of this assignment.
 #[[User:Dondi|John David N. Dionisio]] helped explain the use of curl to complete the deliverables of this assignment.
-#While I worked with the people noted above, this individual journal entry was completed by me and not copied from another source.
+#While I worked with the people noted above, this individual journal entry was completed by me and not copied from another source.[[User:Hhinsch|Hhinsch]] ([[User talk:Hhinsch|talk]]) 23:32, 30 October 2017 (PDT)
 ==References==
 #LMU BioDB 2017. (2017). Week 9. Retrieved October 30, 2017, from https://xmlpipedb.cs.lmu.edu/biodb/fall2017/index.php/Week_9.

@@ Line 82: / Line 82: @@
 #While I worked with the people noted above, this individual journal entry was completed by me and not copied from another source.
 ==References==
 {{hhinsch}}

@@ Line 59: / Line 59: @@
 **<code>https://yeastmine.yeastgenome.org/yeastmine/service/data/Gene?symbol=BRO1</code>
 *Any portions in these URLs that need to be substituted for specific queries, such as the gene name or ID within that web service
-** You simply need to substitute the highlighted portion of the url with any specific yeast gene symbol in order to retrieve the .json data.https://yeastmine.yeastgenome.org/yeastmine/service/data/Gene?symbol=<code>BRO1</code>.
+** You simply need to substitute the highlighted portion of the url with any specific yeast gene symbol in order to retrieve the .json data. https://yeastmine.yeastgenome.org/yeastmine/service/data/Gene?symbol=<code>BRO1</code>.
 *Specific instructions on how to interpret the data returned by each URL so that you can extract exactly the information you need in order to proceed to the next step
 **If you copy the URL that is used to access the desired data and hit enter, your computer will download a .json file that can be easily read in a text editor. From here, it is easy to read the data that is provided. You can also use the computer's terminal to invoke the <code>curl https://yeastmine.yeastgenome.org/yeastmine/service/data/Gene?symbol=BRO1</code> command in order to retrieve the data in a text form. This is a little bit more difficult to read but it is entirely possible to do so if you have some basic knowledge of reading .json. I however would recommend that an individual retrieving this data should use the method for downloading the .json file of the data so it is a bit easier to read.
 ==Electronic Notebook==
 *In order to complete the tests, I dowloaded the three files noted above onto my computer.

@@ Line 1: / Line 1: @@
 [[Category:Journal Entry]]
-==GRNsight Client Side Testing Document: Normalization + Zoom==
+==GRNsight Client Side Testing Document: Normalization + Zoom and Web Service API Exploration==
 *We used the following files for our tests:
@@ Line 54: / Line 55: @@
 |}
 ==Electronic Notebook==
 *In order to complete the tests, I dowloaded the three files noted above onto my computer.

@@ Line 53: / Line 53: @@
 | Test 18 || Pass || I set the normalization factor to <code>0.001</code> and it zoomed out without a problem.
 |}
 {{hhinsch}}

@@ Line 6: / Line 6: @@
 *We used the following files for our tests:
 <br>
-<code>
+<code>21-genes_31-edges_Schade-data_estimation_output.xlsx
 <br>
 -genes_31-edges_Schade-data_estimation_output.sif
 <br>
--genes_31-edges_Schade-data_estimation_output.graphml
+-genes_31-edges_Schade-data_estimation_output.graphml</code>
 {| class="wikitable"