JASPAR the Friendly Ghost - Revision history

Aporras1: /* Acknowledgements */ periods

2017-12-16T00:02:33Z

‎Acknowledgements: periods

2017-12-15T23:40:35Z

added a new source for week 15

2017-12-15T21:20:21Z

‎Working Deliverables: adding code

2017-12-15T21:14:51Z

‎Working Deliverables: added breaks

2017-12-15T21:14:22Z

‎Working Deliverables: Adding readme.txt

2017-12-15T21:13:10Z

‎Executive Summaries: Added my executive summary

2017-12-15T21:09:33Z

‎Eddie's Reflection: Adding sig

2017-12-15T21:08:44Z

‎Weekly Reflections: Adding my reflection

2017-12-15T18:55:41Z

‎Week 15: antonio's week 15 references

2017-12-15T18:54:56Z

‎Acknowledgements: acknowledgements

@@ Line 326: / Line 326: @@
 # A huge thank you to both [[User:kdahlquist|Dr. Dahlquist]] and [[User:Dondi|Dr. Dionisio]] for taking the time to teach this course and support us, the students, throughout the semester's challenges.
 # The [[JASPAR_the_Friendly_Ghost|JASPAR The Friendly Ghost]] team for working as a cohesive unit.
-# The Department of Biology at LMU
+# The Department of Biology at LMU.
-# The Department of Computer Science at LMU
+# The Department of Computer Science at LMU.
 # The entire class composed of students who we worked alongside throughout the semester.

@@ Line 393: / Line 393: @@
 # LMU BioDB 2017. (2017). Week 15. Retrieved December 05, 2017, from https://xmlpipedb.cs.lmu.edu/biodb/fall2017/index.php/Week_15
 # LMU BioDB 2017. (2017). GRNsight Gene Page Project Deliverables. Retrieved December 05, 2017, from https://xmlpipedb.cs.lmu.edu/biodb/fall2017/index.php/GRNsight_Gene_Page_Project_Deliverables
 # Teixeira, M. C., Monteiro, P. T., Guerreiro, J. F., Gonçalves, J. P., Mira, N. P., dos Santos, S. C., ... & Madeira, S. C. (2013). The YEASTRACT database: an upgraded information system for the analysis of gene and genomic transcription regulation in Saccharomyces cerevisiae. Nucleic acids research, 42(D1), D161-D166.

@@ Line 8: / Line 8: @@
 [https://github.com/bhamilton18/GRNsight/tree/gene-database-apis GitHub api branch] (in collaboration with [[Gene_hAPI|Gene_hAPI team]]) <br>
 [[Media:README.txt|Readme.txt]] | December 15, 2017<br>
 ==Working Files==

@@ Line 6: / Line 6: @@
 [[Media:e_and_s_presentation_2.pdf|Eddie and Simon Chapter 6 Presentation]] | November 14, 2017 <br>
 [https://github.com/bhamilton18/GRNsight GitHub fork] <br>
-[https://github.com/bhamilton18/GRNsight/tree/gene-database-apis GitHub api branch] (in collaboration with [[Gene_hAPI|Gene_hAPI team]])
+[https://github.com/bhamilton18/GRNsight/tree/gene-database-apis GitHub api branch] (in collaboration with [[Gene_hAPI|Gene_hAPI team]]) <br>
-[[Media:README.txt|Readme.txt]] | December 15, 2017
+[[Media:README.txt|Readme.txt]] | December 15, 2017<br>
 ==Working Files==

@@ Line 7: / Line 7: @@
 [https://github.com/bhamilton18/GRNsight GitHub fork] <br>
 [https://github.com/bhamilton18/GRNsight/tree/gene-database-apis GitHub api branch] (in collaboration with [[Gene_hAPI|Gene_hAPI team]])
 ==Working Files==

← Older revision		Revision as of 21:13, 15 December 2017
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	====Eddie's Executive Summary====		====Eddie's Executive Summary====
		+	The beginning of this week was spent finishing our feature. We ran into some issues, but we worked it out with King Dondi. Once we were done with the feature, we spent some time making sure that the other teams knew what to expect from JASPAR specifically, so that they could properly put it on the final page product. After we were done with this part of the assignment, we then began to work on the power point presentation. We all worked together at first and then split off to work on our specific parts. We presented, and still didn't celebrate because we had to write an essay. The essay was a lot of repetition and formalities.
		+	[[User:Ebachour\|Ebachour]] ([[User talk:Ebachour\|talk]]) 13:13, 15 December 2017 (PST)

	==Weekly Reflections==		==Weekly Reflections==

@@ Line 316: / Line 316: @@
 # What will I do next time?
 #* I would like to say start earlier, but in all honesty, with all of my other classes and the other assignments that this class was throwing at us, I don't think that was very possible.
 ==Acknowledgements==

← Older revision		Revision as of 21:08, 15 December 2017
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	====Eddie's Reflection====		====Eddie's Reflection====
		+	# What worked?
		+	#* In my opinion, we worked really well as a group to finish the powerpoint ahead of time and start the presentation earlier than some of the other time. This had nothing to do with me, but my teammates were very on top of this whole assignment.
		+	# What didn't work?
		+	#* It was completely unfair how much time we had to spend on this project, especially during the week before and of finals week. And on top of that we are turning in a 40 page paper on our work on the project. Everything worked efficiently within our group and we still struggled with finishing the assignment so it must've been something wrong with the expectations of us for this assignment.
		+	# What will I do next time?
		+	#* I would like to say start earlier, but in all honesty, with all of my other classes and the other assignments that this class was throwing at us, I don't think that was very possible.

	==Acknowledgements==		==Acknowledgements==

← Older revision		Revision as of 18:55, 15 December 2017
Line 378:		Line 378:

	===Week 15===		===Week 15===
		+	#Dahlquist, K. D., Dionisio, J. D. N., Fitzpatrick, B. G., Anguiano, N. A., Varshneya, A., Southwick, B. J., & Samdarshi, M. (2016). GRNsight: a web application and service for visualizing models of small-to medium-scale gene regulatory networks. PeerJ Computer Science, 2, e85.
		+	# LMU BioDB 2017. (2017). Week 15. Retrieved December 05, 2017, from https://xmlpipedb.cs.lmu.edu/biodb/fall2017/index.php/Week_15
		+	# LMU BioDB 2017. (2017). GRNsight Gene Page Project Deliverables. Retrieved December 05, 2017, from https://xmlpipedb.cs.lmu.edu/biodb/fall2017/index.php/GRNsight_Gene_Page_Project_Deliverables
		+	# Teixeira, M. C., Monteiro, P. T., Guerreiro, J. F., Gonçalves, J. P., Mira, N. P., dos Santos, S. C., ... & Madeira, S. C. (2013). The YEASTRACT database: an upgraded information system for the analysis of gene and genomic transcription regulation in Saccharomyces cerevisiae. Nucleic acids research, 42(D1), D161-D166.

	==Team Links==		==Team Links==

← Older revision		Revision as of 18:54, 15 December 2017
Line 312:		Line 312:

	==Acknowledgements==		==Acknowledgements==
		+	# A huge thank you to both [[User:kdahlquist\|Dr. Dahlquist]] and [[User:Dondi\|Dr. Dionisio]] for taking the time to teach this course and support us, the students, throughout the semester's challenges.
		+	# The [[JASPAR_the_Friendly_Ghost\|JASPAR The Friendly Ghost]] team for working as a cohesive unit.
		+	# The Department of Biology at LMU
		+	# The Department of Computer Science at LMU
		+	# The entire class composed of students who we worked alongside throughout the semester.

	==References==		==References==