Johnllopez Week 6 - Revision history

Johnllopez616: /* Links to Other Pages */ Fixed the template link

2017-10-10T01:58:18Z

‎Links to Other Pages: Fixed the template link

Johnllopez616: Added my signature and template

2017-10-10T01:57:53Z

Added my signature and template

Johnllopez616: /* Reading Questions */ Added my image for the first question

2017-10-10T01:56:57Z

‎Reading Questions: Added my image for the first question

Johnllopez616: /* Acknowledgements and References */ Added my acknowledgements and references

2017-10-10T01:33:21Z

‎Acknowledgements and References: Added my acknowledgements and references

Johnllopez616: Added my response for question 10

2017-10-10T01:24:40Z

Added my response for question 10

Johnllopez616: Added my answers for questions 8 and 9

2017-10-10T01:14:35Z

Added my answers for questions 8 and 9

Johnllopez616: Added my response for question 7

2017-10-09T23:12:11Z

Added my response for question 7

Johnllopez616: Added my response for question 6 as well as an acknowledgements and reference section

2017-10-09T22:50:01Z

Added my response for question 6 as well as an acknowledgements and reference section

Johnllopez616: Answered the fifth question

2017-10-09T22:34:49Z

Answered the fifth question

Johnllopez616: Added my response to the fourth reading question

2017-10-09T22:29:33Z

Added my response to the fourth reading question

← Older revision		Revision as of 01:58, 10 October 2017
Line 22:		Line 22:

	===Links to Other Pages===		===Links to Other Pages===
−	{Template:johnllopez616}}	+	{{Template:johnllopez616}}

@@ Line 14: / Line 14: @@
 ===Acknowledgements===
 I worked with my partner [[User:mbalducc | Mary Balducci]] in class. We exchanged contact information on Thursday. On Monday we met in the LSB to go over the assignment and review the material. I also looked up TCA to understand what it was and I found a Khan Academy article to help me answer a question. While I worked with the people noted above, this individual journal entry was completed by me and not copied from another source.
 ===References===
@@ Line 19: / Line 20: @@
   LMU BioDB 2017. (2017). Week 6. Retrieved October 9, 2017, from https://xmlpipedb.cs.lmu.edu/biodb/fall2017/index.php/Week_4
   ''The Citric Acid Cycle''. Khan Academy. Retrieved October 9, 2017, from https://www.khanacademy.org/test-prep/mcat/biomolecules/krebs-citric-acid-cycle-and-oxidative-phosphorylation/a/the-citric-acid-cycle-2

@@ Line 1: / Line 1: @@
 ==Reading Questions==
+# [[File:week6.png]]
 # '''For Gene X:''' Black, Dim Red, Black, Dim Green. '''For Gene Y:''' Black, Medium Red, Bright Green, Dim Green. '''For Gene Z:''' Black, Dim Red, Dim Red, Dim Red
 # I would say that none of these genes were transcribed similar. Although X and Y share color patterns, with the exception of the third ratio, none of the transcription patterns align that well.

@@ Line 12: / Line 12: @@
 ==Acknowledgements and References==
 ===References===
-  https://www.khanacademy.org/test-prep/mcat/biomolecules/krebs-citric-acid-cycle-and-oxidative-phosphorylation/a/the-citric-acid-cycle-2
+  Campbell, A.M. and Heyer, L.J. (2003), “Chapter 4: Basic Research with DNA Microarrays”, in Discovering Genomics, Proteomics, and Bioinformatics, Cold Spring Harbor Laboratory Press, pp. 107-124.

@@ Line 9: / Line 9: @@
 # In a scenario where cells that overexpress the transcription factor Yap1p were subjected to the same experiment of a timecourse of glucose depletion where cells at t0 (plenty of glucose available) are labeled green and cells at later timepoints (glucose depleted) are labeled red, I would expect the spots that represented glucose-repressed genes to be in the later time points of this experiment to be colored red.
 # In a scenario where cells that overexpress the transcription factor Yap1p were subjected to the same experiment of a timecourse of glucose depletion where cells at t0 (plenty of glucose available) are labeled green and cells at later timepoints (glucose depleted) are labeled red, I would expect the spots that represented Yap1p target genes to be in the later time points of this experiment to be colored red.
 ==Acknowledgements and References==
 ===References===
   https://www.khanacademy.org/test-prep/mcat/biomolecules/krebs-citric-acid-cycle-and-oxidative-phosphorylation/a/the-citric-acid-cycle-2

@@ Line 6: / Line 6: @@
 # The image indicated that TEF4 was repressed due to the light green color. This might be the case due to an increasing lack of glucose. Since glucose is necessary for translation to occur in this scenario (as it is the only available food source), the cell would respond to this by having perofrming less translation in order to preserve glucose.
 #With the supply of glucose decreasing, the cells begin to perform cellular respiration in order to preserve what supply remains so that the cell might have energy.
+# The guilt by association method is a way for the genome use to that ensure genes for enzymes in a common pathway are induced or repressed simultaneously because despite not knowing what that gene is, the same induction/repression can occur.
 ==Acknowledgements and References==
 ===References===
   https://www.khanacademy.org/test-prep/mcat/biomolecules/krebs-citric-acid-cycle-and-oxidative-phosphorylation/a/the-citric-acid-cycle-2

← Older revision		Revision as of 22:50, 9 October 2017
Line 5:		Line 5:
	# Because the yellow color comes from the indication that there is no change within the genes, it would indicate that the reason most spots are yellow at their first time point is due to the fact that no change has occurred.		# Because the yellow color comes from the indication that there is no change within the genes, it would indicate that the reason most spots are yellow at their first time point is due to the fact that no change has occurred.
	# The image indicated that TEF4 was repressed due to the light green color. This might be the case due to an increasing lack of glucose. Since glucose is necessary for translation to occur in this scenario (as it is the only available food source), the cell would respond to this by having perofrming less translation in order to preserve glucose.		# The image indicated that TEF4 was repressed due to the light green color. This might be the case due to an increasing lack of glucose. Since glucose is necessary for translation to occur in this scenario (as it is the only available food source), the cell would respond to this by having perofrming less translation in order to preserve glucose.
		+	#With the supply of glucose decreasing, the cells begin to perform cellular respiration in order to preserve what supply remains so that the cell might have energy.
		+
		+
		+	==Acknowledgements and References==
		+	===References===
		+	https://www.khanacademy.org/test-prep/mcat/biomolecules/krebs-citric-acid-cycle-and-oxidative-phosphorylation/a/the-citric-acid-cycle-2