Kwrigh35: finished adding amino acid sequences, did minor reformatting

2017-09-09T19:43:41Z

finished adding amino acid sequences, did minor reformatting

Kwrigh35: Began Assignment, not finished yet

2017-09-08T20:41:51Z

Began Assignment, not finished yet

New page

==The Genetic Code==

===Original DNA Sequence===
5’-cgtatgctaataccatgttccgcgtataacccagccgccagttccgctggcggcatttta-3’

===Complementary DNA Strand===
3'-gcatacgattatggtacaaggcgcatattgggtcggcggtcaaggcgaccgccgtaaaat-5'

===Reading Frames===
====RNA from Original Sequence====
=====Frame +1=====
5’-cgu-aug-cua-aua-cca-ugu-ucc-gcg-uau-aac-cca-gcc-gcc-agu-ucc-gcu-ggc-ggc-auu-uua-3’ 
5'-R-M-L-I-P-C-S-A-Y-N-P-A-A-S-S-A-G-G-I-L-3'
=====Frame +2=====
5’-cg-uau-gcu-aau-acc-aug-uuc-cgc-gua-uaa-ccc-agc-cgc-cag-uuc-cgc-ugg-cgg-cau-uuu-a-3’ 
5'-
=====Frame +3=====
5’-c-gua-ugc-uaa-uac-cau-guu-ccg-cgu-aua-acc-cag-ccg-cca-guu-ccg-cug-gcg-gca-uuu-ta-3’ 
5'-

====Complementary RNA Strand====
3'-gcauacgauuaugguacaaggcgcauauugggucggcggucaaggcgaccgccguaaaau-5' 
''in reverse direction'' 
5'-uaaaaugccgccagcggaacuggcggcuggguuauacgcggaacaugguauuagcauacg-3'
=====Frame -1=====
5'-uaa-aau-gcc-gcc-agc-gga-acu-ggc-ggc-ugg-guu-aua-cgc-gga-aca-ugg-uau-uag-cau-acg-3' 
5'-
=====Frame -2=====
5'-ua-aaa-ugc-cgc-cag-cgg-aac-ugg-cgg-cug-ggu-uau-acg-cgg-aac-aug-gua-uua-gca-uac-g-3' 
5'-
=====Frame -3=====
5'-u-aaa-aug-ccg-cca-gcg-gaa-cug-gcg-gcu-ggg-uua-uac-gcg-gaa-cau-ggu-auu-agc-aua-cg-3' 
5'-

 
==Acknowledgments==
*I worked with my Homework partner [[User:Simonwro120|Simon Wroblewski]] Friday afternoon in the computer lab. We compared our sequences to check for errors and talked about wiki formatting.
*While I worked with the people noted above, this individual journal entry was completed by me and not copied from another source. [[User:Kwrigh35|Kwrigh35]] ([[User talk:Kwrigh35|talk]]) 13:41, 8 September 2017 (PDT)

==References==
*LMU BioDB 2017. (2017). Week 2. Retrieved September 8, 2017, from [https://xmlpipedb.cs.lmu.edu/biodb/fall2017/index.php/Week_2]

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@@ Line 5: / Line 5: @@
 ===Complementary DNA Strand===
-'-gcatacgattatggtacaaggcgcatattgggtcggcggtcaaggcgaccgccgtaaaat-5'
+'-gcatacgattatggtacaaggcgcatattgggtcggcggtcaaggcgaccgccgtaaaat-5'<br>
 ===Reading Frames===
-====RNA from Original Sequence====
+====Frame +1====
 ’-cgu-aug-cua-aua-cca-ugu-ucc-gcg-uau-aac-cca-gcc-gcc-agu-ucc-gcu-ggc-ggc-auu-uua-3’ <br>
-'-R-M-L-I-P-C-S-A-Y-N-P-A-A-S-S-A-G-G-I-L-3'
+'-R-M-L-I-P-C-S-A-Y-N-P-A-A-S-S-A-G-G-I-L-3' ''open reading frame''
-=====Frame +2=====
+====Frame +2====
 ’-cg-uau-gcu-aau-acc-aug-uuc-cgc-gua-uaa-ccc-agc-cgc-cag-uuc-cgc-ugg-cgg-cau-uuu-a-3’<br>
-'-
+'-Y-A-N-T-M-F-R-V-3' ''stop codon (uaa) after valine''
-=====Frame +3=====
+====Frame +3====
 ’-c-gua-ugc-uaa-uac-cau-guu-ccg-cgu-aua-acc-cag-ccg-cca-guu-ccg-cug-gcg-gca-uuu-ta-3’  <br>
-'-
+'-V-C-3' ''stop codon (uaa) after cysteine''
 ====Frame -1====
 '-uaa-aau-gcc-gcc-agc-gga-acu-ggc-ggc-ugg-guu-aua-cgc-gga-aca-ugg-uau-uag-cau-acg-3' <br>
-'-
+  ''first codon is stop''
-=====Frame -2=====
+====Frame -2====
 '-ua-aaa-ugc-cgc-cag-cgg-aac-ugg-cgg-cug-ggu-uau-acg-cgg-aac-aug-gua-uua-gca-uac-g-3' <br>
-'-
+'-K-C-R-Q-R-N-W-R-L-G-Y-T-R-N-M-V-L-A-Y-3' ''open reading frame''
-=====Frame -3=====
+====Frame -3====
 '-u-aaa-aug-ccg-cca-gcg-gaa-cug-gcg-gcu-ggg-uua-uac-gcg-gaa-cau-ggu-auu-agc-aua-cg-3' <br>
-'-
+'-K-M-P-P-A-E-L-A-A-G-L-Y-A-E-H-G-I-S-I-3' ''open reading frame''
 <br>
@@ Line 40: / Line 35: @@
 ==References==
-*LMU BioDB 2017. (2017). Week 2. Retrieved September 8, 2017, from [https://xmlpipedb.cs.lmu.edu/biodb/fall2017/index.php/Week_2]
+*LMU BioDB 2017. (2017). Week 2. Retrieved September 8, 2017, from [https://xmlpipedb.cs.lmu.edu/biodb/fall2017/index.php/Week_2|Week 2]
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Kwrigh35 Week 2 - Revision history

Kwrigh35: finished adding amino acid sequences, did minor reformatting

Kwrigh35: Began Assignment, not finished yet