QLanners Week 3 - Revision history

Qlanners: fixed some typos in the electronic journal

2017-09-20T06:20:03Z

fixed some typos in the electronic journal

Qlanners: added link to coaches page that was used as the "hack-page"

2017-09-20T06:11:51Z

added link to coaches page that was used as the "hack-page"

Qlanners: small typo fixed

2017-09-20T06:00:19Z

small typo fixed

Qlanners: Moved electronic journal from separate page to here

2017-09-19T21:58:45Z

Moved electronic journal from separate page to here

Qlanners: but wiki sig on a new line

2017-09-19T21:40:50Z

but wiki sig on a new line

Qlanners: added links using template

2017-09-19T21:40:24Z

added links using template

Qlanners: Added rest of Links from the html command code retrieval

2017-09-19T21:34:38Z

Added rest of Links from the html command code retrieval

Qlanners: fixed typo

2017-09-19T21:31:06Z

fixed typo

Qlanners: Electronic Journal moved to own individual page

2017-09-19T17:48:33Z

Electronic Journal moved to own individual page

Qlanners: added acknowledgements and references

2017-09-19T17:34:40Z

added acknowledgements and references

@@ Line 75: / Line 75: @@
 ==Electronic Journal==
-In the hack-a-page part of this assignment, I chose to make myself the head coach of my favorite football team. I went to the | Minnesota Vikings Coaching Page in Chrome browser and opened the develop tools in order to do so. I copied the link to the picture in my wiki profile and pasted this as the source of the image for the team's head coach. I then changed the name of the coach to my name, and also added "Future 2018 Super Bowl Champions" to the description of my position.
+In the hack-a-page part of this assignment, I chose to make myself the head coach of my favorite football team. I went to the Minnesota Vikings Coaching Page in a Chrome browser and opened the developer tools in order to to complete the assignment. I copied the link to the picture in my wiki profile and pasted this as the source of the image for the team's head coach. I then changed the name of the coach to my name, and also added "Future 2018 Super Bowl Champions" to the description of my position.
-In the second part of this weeks assignment, the pages Introduction to the Command Line, Dynamic Text Processing and The Web from the Command Line were utilized throughout the complete the tasks. In order to access the webpage, my partner and I utilized the format on the The Web from the Command Line page for how to post and submit data into parts of a webpage and return the HTML. By looking at the developer tools for the [1] page, we were able to determine the arguments that needed to be included for the command. We compared our returned HTML in the terminal with that in the return page's developer tools to ensure that our code was correct.
+In the second part of this weeks assignment, the pages Introduction to the Command Line, Dynamic Text Processing and The Web from the Command Line were utilized throughout to complete the tasks. In order to access the webpage, my partner and I utilized the format on the The Web from the Command Line page for how to post and submit data into parts of a webpage and return the HTML. By looking at the developer tools for the page, we were able to determine the arguments that needed to be included for the command. We compared our returned HTML in the terminal with that in the page's developer tools to ensure that our code was correct.
-Once the webpage command was perfected in the command terminal, we parsed through the links and identifiers in the returned HTML. By using the browser to look up all of the things included in the HTML of the returned page, we came up with the lists above, along with a description of each element. For this section, my partner Dina Bashour and I worked together in person to split up the work in order to maximize efficiency.
+Once the webpage command was perfected in the command terminal, we parsed through the links and identifiers in the returned HTML. By using the browser to look up all of the links included in the HTML of the returned page and using the developer tools to see what each identifier was for, we came up with the lists above, along with a description of each element. For this section, my partner Dina Bashour and I worked together in person to split up the work in order to maximize efficiency.
 To get just the answers out of the returned HTML text from the command, we referenced the material covered in the Dynamic Text Processing page. We utilized the deletion capability to delete all of the lines of text that came before and after the section of the HTML that contained our answers. We then used a more sophisticated syntax to delete any text that was in between the < and > symbols. This left just the text of the answers.

← Older revision		Revision as of 06:11, 20 September 2017
Line 69:		Line 69:
	==References==		==References==

		+	Coaches. (2017). Retrieved September 19, 2017, from http://www.vikings.com/team/coaches.html <br>
	LMU BioDB 2017. (2017). Week 3. Retrieved September 18, 2017, from https://xmlpipedb.cs.lmu.edu/biodb/fall2017/index.php/Week_3		LMU BioDB 2017. (2017). Week 3. Retrieved September 18, 2017, from https://xmlpipedb.cs.lmu.edu/biodb/fall2017/index.php/Week_3
		+

← Older revision		Revision as of 06:00, 20 September 2017
Line 52:		Line 52:


−	'''Command used to retrieve info at a just-the-~~info~~ level:'''	+	'''Command used to retrieve info at a just-the-answers level:'''

	curl -X POST -d "pre_text=cgatggtacatggagtccagtagccgtagtgatgagatcgatgagctagc&output=Verbose&code=Standard&submit=Submit" http://web.expasy.org/cgi-bin/translate/dna_aa \| sed "1,47d" \| sed "13q" \| sed "s/<[^>]*>//g"		curl -X POST -d "pre_text=cgatggtacatggagtccagtagccgtagtgatgagatcgatgagctagc&output=Verbose&code=Standard&submit=Submit" http://web.expasy.org/cgi-bin/translate/dna_aa \| sed "1,47d" \| sed "13q" \| sed "s/<[^>]*>//g"

@@ Line 65: / Line 65: @@
 '''While I worked with the people noted above, this individual journal entry was completed by me and not copied from another source.''' <br>
 [[User:Qlanners|Qlanners]] ([[User talk:Qlanners|talk]]) 10:34, 19 September 2017 (PDT)
 ==References==
 LMU BioDB 2017. (2017). Week 3. Retrieved September 18, 2017, from https://xmlpipedb.cs.lmu.edu/biodb/fall2017/index.php/Week_3
 ==Links==
 {{Template:QLannersLinks}}

@@ Line 63: / Line 63: @@
 #[[The Web from the Command Line]] for information on how to communicate with a website via the command line.
 #[[Dynamic Text Processing]] for information on how to parse through text in order to retrieve just the desired information.
-'''While I worked with the people noted above, this individual journal entry was completed by me and not copied from another source.'''
+'''While I worked with the people noted above, this individual journal entry was completed by me and not copied from another source.''' <br>
 [[User:Qlanners|Qlanners]] ([[User talk:Qlanners|talk]]) 10:34, 19 September 2017 (PDT)

← Older revision		Revision as of 21:40, 19 September 2017
Line 69:		Line 69:

	LMU BioDB 2017. (2017). Week 3. Retrieved September 18, 2017, from https://xmlpipedb.cs.lmu.edu/biodb/fall2017/index.php/Week_3		LMU BioDB 2017. (2017). Week 3. Retrieved September 18, 2017, from https://xmlpipedb.cs.lmu.edu/biodb/fall2017/index.php/Week_3
		+
		+	==Links==
		+	{{Template:QLannersLinks}}

← Older revision		Revision as of 21:34, 19 September 2017
Line 25:		Line 25:
	#http://www.expasy.org : Link to the ExPasy Bioinformatics Resource Portal Home		#http://www.expasy.org : Link to the ExPasy Bioinformatics Resource Portal Home
	#http://web.expasy.org/translate : Link to the Translate Tool page (without any input in)		#http://web.expasy.org/translate : Link to the Translate Tool page (without any input in)
		+	#http://en.wikipedia.org/wiki/Open_reading_frame : Wikipedia page for open reading frame
		+	#http://web.expasy.org/cgi-bin/translate/dna_sequences?/work/expasy/tmp/http/seqdna.28321,1 : ExPASy translate tool highlighting open reading frames for frame 1
		+	#http://web.expasy.org/cgi-bin/translate/dna_sequences?/work/expasy/tmp/http/seqdna.28321,2 : ExPASy translate tool highlighting open reading frames for frame 2
		+	#http://web.expasy.org/cgi-bin/translate/dna_sequences?/work/expasy/tmp/http/seqdna.28321,3 : ExPASy translate tool highlighting open reading frames for frame 3
		+	#http://web.expasy.org/cgi-bin/translate/dna_sequences?/work/expasy/tmp/http/seqdna.28321,4 : ExPASy translate tool highlighting open reading frames for frame 1
		+	#http://web.expasy.org/cgi-bin/translate/dna_sequences?/work/expasy/tmp/http/seqdna.28321,5 : ExPASy translate tool highlighting open reading frames for frame 2
		+	#http://web.expasy.org/cgi-bin/translate/dna_sequences?/work/expasy/tmp/http/seqdna.28321,6 : ExPASy translate tool highlighting open reading frames for frame 3
		+	#http://www.isb-sib.ch : Swiss Institute of Bioinformatics link at bottom of page
		+	#https://www.expasy.org/disclaimer.html : ExPASy disclaimer
		+	#https://www.google-analytics.com/ga.js : Java script code used within the website

@@ Line 1: / Line 1: @@
 ==Hack a Webpage==
-  Image of Hacked Webpage without the develop tools showing. Changes done to add in image and text of the Head Coach of the Minnesota Vikings.
+  Image of Hacked Webpage without the developer tools showing. Changes done to add in image and text of the Head Coach of the Minnesota Vikings.
 [[File:LannersHackedWebpageWithoutDeveloper.png | 1000px]]
-  Image of Hacked Webpage with the develop tools showing. Changes done to add in image and text of the Head Coach of the Minnesota Vikings.
+  Image of Hacked Webpage with the developer tools showing. Changes done to add in image and text of the Head Coach of the Minnesota Vikings.
 [[File:LannersHackedWebpageWithDeveloper.png | 1000px]]

← Older revision		Revision as of 17:48, 19 September 2017
Line 59:		Line 59:

	LMU BioDB 2017. (2017). Week 3. Retrieved September 18, 2017, from https://xmlpipedb.cs.lmu.edu/biodb/fall2017/index.php/Week_3		LMU BioDB 2017. (2017). Week 3. Retrieved September 18, 2017, from https://xmlpipedb.cs.lmu.edu/biodb/fall2017/index.php/Week_3
−
−	~~==Electronic Laboratory Notebook==~~
−
−	In the hack-a-page part of this assignment, I chose to make myself the head coach of my favorite football team. I went to the [http://www.vikings.com/team/coaches.html \| Minnesota Vikings Coaching Page] in Chrome browser and opened the develop tools in order to do so. I copied the link to the picture in my wiki profile and pasted this as the source of the image for the team's head coach. I then changed the name of the coach to my name, and also added "Future 2018 Super Bowl Champions" to the description of my position.
−
−	In the second part of this weeks assignment, the pages [[Introduction to the Command Line]], [[Dynamic Text Processing]] and [[The Web from the Command Line]] were utilized throughout the complete the tasks. In order to access the webpage, my partner and I utilized the format on the [[The Web from the Command Line]] page for how to post and submit data into parts of a webpage and return the HTML. By looking at the developer tools for the [http://web.expasy.org/translate/] page, we were able to determine the arguments that needed to be included for the command. We compared our returned HTML in the terminal with that in the return page's developer tools to ensure that our code was correct.
−
−	Once the webpage command was perfected in the command terminal, we parsed through the links and identifiers in the returned HTML. By using the browser to look up all of the things included in the HTML of the returned page, we came up with the lists above, along with a description of each element. For this section, my partner [[User:Dbashour \| Dina Bashour]] and I worked together in person to split up the work in order to maximize efficiency.
−
−	To get just the answers out of the returned HTML text from the command, we referenced the material covered in the [[Dynamic Text Processing]] page. We utilized the deletion capability to delete all of the lines of text that came before and after the section of the HTML that contained our answers. We then used a more sophisticated syntax to delete any text that was in between the < and > symbols. This left just the text of the answers.

← Older revision		Revision as of 17:34, 19 September 2017
Line 45:		Line 45:

	curl -X POST -d "pre_text=cgatggtacatggagtccagtagccgtagtgatgagatcgatgagctagc&output=Verbose&code=Standard&submit=Submit" http://web.expasy.org/cgi-bin/translate/dna_aa \| sed "1,47d" \| sed "13q" \| sed "s/<[^>]*>//g"		curl -X POST -d "pre_text=cgatggtacatggagtccagtagccgtagtgatgagatcgatgagctagc&output=Verbose&code=Standard&submit=Submit" http://web.expasy.org/cgi-bin/translate/dna_aa \| sed "1,47d" \| sed "13q" \| sed "s/<[^>]*>//g"
		+
		+
		+	==Acknowledgements==
		+
		+	#I met with my homework partner [[User:Dbashour \| Dina Bashour]] for a three hour period outside of class to work on the more difficult command line portion of this assignment. We worked through developing the commands necessary to call the webpage along with retrieve just the answers. We also communicated through text on multiple occasions for smaller questions regarding the assignment.
		+	#The [[Introduction to the Command Line]] for information on how to navigate the command line.
		+	#[[The Web from the Command Line]] for information on how to communicate with a website via the command line.
		+	#[[Dynamic Text Processing]] for information on how to parse through text in order to retrieve just the desired information.
		+	'''While I worked with the people noted above, this individual journal entry was completed by me and not copied from another source.'''
		+	[[User:Qlanners\|Qlanners]] ([[User talk:Qlanners\|talk]]) 10:34, 19 September 2017 (PDT)
		+
		+	==References==
		+
		+	LMU BioDB 2017. (2017). Week 3. Retrieved September 18, 2017, from https://xmlpipedb.cs.lmu.edu/biodb/fall2017/index.php/Week_3

	==Electronic Laboratory Notebook==		==Electronic Laboratory Notebook==