Simonwro120 Week 15 - Revision history

Aporras1: final paper upload

2017-12-15T23:56:50Z

final paper upload

Simonwro120: more detail

2017-12-14T04:29:18Z

more detail

Simonwro120: signature/template

2017-12-14T04:19:54Z

signature/template

Simonwro120: described deliverables

2017-12-14T04:16:14Z

described deliverables

Simonwro120: more description

2017-12-14T03:55:43Z

more description

Simonwro120: syntax/outline

2017-12-14T03:38:58Z

syntax/outline

Simonwro120: outline deliverables, added descriptions, added date

2017-12-14T03:32:19Z

outline deliverables, added descriptions, added date

Simonwro120: added day descriptions

2017-12-14T03:20:48Z

added day descriptions

Qlanners: added link for final group presentation

2017-12-12T07:14:40Z

added link for final group presentation

Simonwro120: added JASPAR api reference

2017-12-08T00:00:54Z

added JASPAR api reference

@@ Line 56: / Line 56: @@
 #Electronic notebook corresponding to these the microarray results files ([[Week 8]], [[Week 10]], and Weeks 11-15) support ''reproducible research'' so that all manipulations of the data and files are documented so that someone else could begin with your starting file, follow the protocol, and obtain your results.
 #*Deliverables 7 - 13 came from our Data Analyst's (Antonio) hard work
 == Acknowledgements ==

@@ Line 1: / Line 1: @@
-=Electronic Notebook=
+='''Electronic Notebook'''=
 [[Media:JASPAR The Friendly Ghost Group Presentation.pdf|JASPAR the Friendly Ghost Final Group Presentation]] | December 11, 2017
 ===Tuesday (12/5/17)===
-*Worked with Eddie on setting up GRNsight locally on my computer, allowing for edits/changes without altering the master version of the application.
+*Worked with Eddie on setting up GRNsight locally on my computer, allowing for edits/changes without altering the master version of the application
-**Blair H. forked the master version of GRNsight from Dr. Dionisio's repository and the rest of the coders cloned that repository from her fork.
+**Blair H. forked the master version of GRNsight from Dr. Dionisio's repository and the rest of the coders cloned that repository from her fork
 **Became familiar with the GRNsight code for future implementation.
-===Thursday(12/7/17)===
+===Thursday (12/7/17)===
-*Worked with Eddie B. and Dr. Dionisio on the API requests. Attempting to create a solution to the CORS (Cross Origin Resource Sharing) issue that was involved with the JASPAR database.
+*Worked with Eddie B. and Dr. Dionisio on the API requests. Attempting to create a solution to the CORS (Cross Origin Resource Sharing) issue that was involved with the JASPAR database
-**Eddie and Dr. Dionisio created a workaround for this problem by implementing a relay controller.
+*Near the end of class, Quinn, Antonio, Eddie and myself all exchanged e-mails so that we could all start working on both the powerpoint and paper in a collaborative manner
 ===Deliverable Checklist===
 # Organized Team deliverables wiki page (or other media (CD or flash drive) with table of contents)
@@ Line 47: / Line 56: @@
 #Electronic notebook corresponding to these the microarray results files ([[Week 8]], [[Week 10]], and Weeks 11-15) support ''reproducible research'' so that all manipulations of the data and files are documented so that someone else could begin with your starting file, follow the protocol, and obtain your results.
 #*Deliverables 7 - 13 came from our Data Analyst's (Antonio) hard work
 == Acknowledgements ==

@@ Line 47: / Line 47: @@
 #Electronic notebook corresponding to these the microarray results files ([[Week 8]], [[Week 10]], and Weeks 11-15) support ''reproducible research'' so that all manipulations of the data and files are documented so that someone else could begin with your starting file, follow the protocol, and obtain your results.
 #*Deliverables 7 - 13 came from our Data Analyst's (Antonio) hard work
 == Acknowledgements ==
@@ Line 52: / Line 55: @@
 *Both Eddie B. and I worked primarily together to complete the list of deliverables expected from the "Coders" group.
 *I'd also like to acknowledge the help both Dondi and Dr. Dahlquist for their detailed instructions on completing this assignment.
 *While I worked with the people noted above, this individual journal entry was completed by me and not copied from another source.
 == References ==

@@ Line 45: / Line 45: @@
 #GRNmap input workbook (with network adjacency matrix, ''.xlsx'')
 #GRNmap output workbook (''.xlsx'')
 #Electronic notebook corresponding to these the microarray results files ([[Week 8]], [[Week 10]], and Weeks 11-15) support ''reproducible research'' so that all manipulations of the data and files are documented so that someone else could begin with your starting file, follow the protocol, and obtain your results.
+#*Deliverables 7 - 13 came from our Data Analyst's (Antonio) hard work
 == Acknowledgements ==

@@ Line 10: / Line 10: @@
 ===Deliverable Checklist===
 # Organized Team deliverables wiki page (or other media (CD or flash drive) with table of contents)
-#*Project Manager (Quinn) will ensure that all the deliverables are organized and delivered properly and on time.
+#*Project Manager (Quinn) will ensure that all the deliverables are organized and delivered properly and on time
 # Group Report (''.doc'', ''.docx'' or ''.pdf'' file)
 #*<u>'''Outline'''</u>
@@ Line 29: / Line 29: @@
 ##References
 ##*All members
-# Individual statements of work, assessments, reflections (wiki page, ''.doc'', ''.docx'', ''.pdf'', or e-mailed to both Dr. Dahlquist and Dr. Dionisio)
+#Individual statements of work, assessments, reflections (wiki page, ''.doc'', ''.docx'', ''.pdf'', or e-mailed to both Dr. Dahlquist and Dr. Dionisio)
-# Group PowerPoint presentation (given on Tuesday, December 12, ''.ppt'', ''.pptx'' or ''.pdf'' file)
+#*Team members should complete this task individually
-# Code (GitHub pull request)
+#Group PowerPoint presentation (given on Tuesday, December 12, ''.ppt'', ''.pptx'' or ''.pdf'' file)
-#* Each team should coordinate in performing a final integration and integration testing iteration (see [[Coder]] milestone for details) which the Interaction and Integration team then submits to the ''original'' GRNsight GitHub repository as a single, unified pull request from the class project’s fork
+#*Separate sections were completed by different members of the group initially
-# Supply a README that summarizes the functionality of your team's new feature (''.txt'' or ''.md'', ''one README per team'')
+#*Merged separated sections together to create a coherent and informative powerpoint presentation
-# Excel spreadsheet with ANOVA results/stem formatting (''.xlsx'')
+#*Practiced verbal presentation until it was executed smoothly
-# PowerPoint of screenshots of stem results (''.pptx'')
+#Code (GitHub pull request)
-# Gene List and GO List files from each significant profile (''.txt'' compressed together in a ''.zip'' file)
+#*As stated previously, Blair forked from Dondi, and the rest of the class coned that forked repository.
-# YEASTRACT "rank by TF" results (''.xlsx'')
+#Supply a README that summarizes the functionality of your team's new feature (''.txt'' or ''.md'', ''one README per team'')
-# GRNmap input workbook (with network adjacency matrix, ''.xlsx'')
+#*Coders should create this explanatory file, project manager may have some input as well
-# GRNmap output workbook (''.xlsx'')
+#Excel spreadsheet with ANOVA results/stem formatting (''.xlsx'')
-# Electronic notebook corresponding to these the microarray results files ([[Week 8]], [[Week 10]], and Weeks 11-15) support ''reproducible research'' so that all manipulations of the data and files are documented so that someone else could begin with your starting file, follow the protocol, and obtain your results.
+#PowerPoint of screenshots of stem results (''.pptx'')

@@ Line 2: / Line 2: @@
 ==Deliverables==
 [[Media:JASPAR The Friendly Ghost Group Presentation.pdf|JASPAR the Friendly Ghost Final Group Presentation]] | December 11, 2017
-==Tuesday==
+==Tuesday (12/5/17)==
+*Worked with Eddie on setting up GRNsight locally on my computer, allowing me to make edits/changes without altering the master version of the application.
 ==Thursday==
+*Worked with Eddie B. and Dr. Dionisio on the API requests. We were trying to work around a CORS (Cross Origin Resource Sharing) issue that was involved with the JASPAR database.
 == Acknowledgements ==
-*I worked with my homework partner, Eddie Bachoura, on this assignment.
+*I worked with my homework partners, Eddie Bachoura, Quinn Lanners, and Antonio on this assignment.
 *I'd also like to acknowledge the help both Dondi and Dr. Dahlquist for their detailed instructions on completing this assignment.
 *While I worked with the people noted above, this individual journal entry was completed by me and not copied from another source.

@@ Line 11: / Line 11: @@
 == References ==
-#LMU BioDB 2017. (2017). Week 15 Retrieved December 7, 2017, from [https://xmlpipedb.cs.lmu.edu/biodb/fall2017/index.php/Week_15 https://xmlpipedb.cs.lmu.edu/biodb/fall2017/index.php/Week_15]
+#LMU BioDB 2017. (2017). Retrieved December 7, 2017, from [https://xmlpipedb.cs.lmu.edu/biodb/fall2017/index.php/Week_15 https://xmlpipedb.cs.lmu.edu/biodb/fall2017/index.php/Week_15]
-#LMU BioDB 2017. (2017). Week 15 Retrieved December 7, 2017, from [https://xmlpipedb.cs.lmu.edu/biodb/fall2017/index.php/JASPAR_the_Friendly_Ghost#Eddie.27s_Reflection_3 https://xmlpipedb.cs.lmu.edu/biodb/fall2017/index.php/JASPAR_the_Friendly_Ghost#Eddie.27s_Reflection_3]
+#LMU BioDB 2017. (2017). Retrieved December 7, 2017, from [https://xmlpipedb.cs.lmu.edu/biodb/fall2017/index.php/JASPAR_the_Friendly_Ghost#Eddie.27s_Reflection_3 https://xmlpipedb.cs.lmu.edu/biodb/fall2017/index.php/JASPAR_the_Friendly_Ghost#Eddie.27s_Reflection_3]