Zvanysse Week 9 - Revision history

Zvanysse: adding how I got to curl

2017-10-31T01:30:28Z

adding how I got to curl

Zvanysse: /* URL */

2017-10-31T01:20:52Z

‎URL

Zvanysse: fixed a typo

2017-10-30T20:34:40Z

fixed a typo

Zvanysse: Uploaded link

2017-10-30T07:33:45Z

Uploaded link

Zvanysse: updated tests

2017-10-26T01:53:27Z

updated tests

Zvanysse: checked up to 9

2017-10-26T01:44:28Z

checked up to 9

Zvanysse: uplaoding tests 1-6

2017-10-26T01:34:37Z

uplaoding tests 1-6

New page

==Electronic workbook==
First, we downloaded three files with different file extensions: .xlsx, .graphml, and .sif. The three files are:

#https://github.com/dondi/GRNsight/blob/beta/test-files/demo-files/21-genes_31-edges_Schade-data_estimation_output.graphml
#https://github.com/dondi/GRNsight/blob/beta/test-files/demo-files/21-genes_31-edges_Schade-data_estimation_output.sif
#https://github.com/dondi/GRNsight/blob/beta/test-files/demo-files/21-genes_31-edges_Schade-data_estimation_output.xlsx

Note how these are the same files as my homework partner, Antonia Porras.
===Test 1===
First, we went to GRNsight and opened the excel file. We checked to see if any of the nodes would go outside of the view port window if it were to be selected. We did this by dragging the nodes trying to bring them outside of the view port. The test '''PASSED''' with no errors.
===Test 2===
First, we went to GRNsight and imported the sif file. We checked to see if any of the nodes would go outside of the view port window if it were to be selected. We did this by dragging the nodes trying to bring them outside of the view port. The test '''PASSED''' with no errors.
===Test 3===
First, we went to GRNsight and imported the GraphML file. We checked to see if any of the nodes would go outside of the view port window if it were to be selected. We did this by dragging the nodes trying to bring them outside of the view port. The test '''PASSED''' with no errors.
===Test 4===
First, we went to GRNsight and opened the excel file. We checked to see if any of the nodes would go outside of the view port window if it were to be unchecked. We did this by dragging the nodes trying to bring them outside of the view port. The test '''FAILED''' with the following errors: Unable to move nodes outside of the box on the right, top, and left, but was able to on the bottom. Below is an example image: [[File:Test3_biodb_zv.PNG | 800x800px]]
===Test 5===
First, we went to GRNsight and imported the Sif file. We checked to see if any of the nodes would go outside of the view port window if it were to be unchecked. We did this by dragging the nodes trying to bring them outside of the view port. The test '''FAILED''' with the following errors: Unable to move nodes outside of the box on the right, top, and left, but was able to on the bottom. Below is an example image: [[File:Test4_biodb_zv.PNG | 800x800px]]
===Test 6===
First, we went to GRNsight and imported the GraphML file. We checked to see if any of the nodes would go outside of the view port window if it were to be unchecked. We did this by dragging the nodes trying to bring them outside of the view port. The test '''FAILED''' with the following errors: Unable to move nodes outside of the box on the right, top, and left, but was able to on the bottom. Below is an example image: [[File:Test4_biodb_zv.PNG | 800x800px]]

@@ Line 58: / Line 58: @@
 #If you would like to know more data, place a semi-colon after "json" and type "expand=1"
 ==Acknowledgments==
 *I worked with Antonio Porras to complete the test cases.

@@ Line 1: / Line 1: @@
 ==URL==
 http://rest.ensembl.org/lookup/symbol/saccharomyces_cerevisiae/BRO1?content-type=application/json;expand=1
 *Note: an explanation is provided in the Electronic Workbook.
 ==Electronic workbook==
 First, we downloaded three files with different file extensions: .xlsx, .graphml, and .sif. The three files are:

@@ Line 48: / Line 48: @@
 ==URL Explanation==
-First, I decided to go from the middle out. At first, I noticed that I could just change the ID name in this URL: "http://rest.ensembl.org/lookup/id/YPL084W?content-type=application/json;expand=1" however this does not get from the actual name "BRO1" to the relevant information. So I browsed the API dictionary knowing that I had to use both "BRO1" and "saccharomyces_cerevisiae" in the URL. I came across a lookup guide that takes in the Gene name and related species and spews out the information on that gene. This is how I arrived at this part of the URL: "http://rest.ensembl.org/lookup/symbol/saccharomyces_cerevisiae/BRO1?" The next part was figuring out the content-type=application/json part. This is basically just a necessary logistical part that lets the service know that the user wants a son format. "expand=1" basically expands the information into more data. I wasn't sure if it was necessary, but the data was relevant so I decided to go forth and add it in.
+First, I decided to go from the middle out. At first, I noticed that I could just change the ID name in this URL: "http://rest.ensembl.org/lookup/id/YPL084W?content-type=application/json;expand=1" however this does not get from the actual name "BRO1" to the relevant information. So I browsed the API dictionary knowing that I had to use both "BRO1" and "saccharomyces_cerevisiae" in the URL. I came across a lookup guide that takes in the Gene name and related species and spews out the information on that gene. This is how I arrived at this part of the URL: "http://rest.ensembl.org/lookup/symbol/saccharomyces_cerevisiae/BRO1?" The next part was figuring out the content-type=application/json part. This is basically just a necessary logistical part that lets the service know that the user wants a json format. "expand=1" basically expands the information into more data. I wasn't sure if it was necessary, but the data was relevant so I decided to go forth and add it in.
 #type in http://rest.ensembl.org/lookup/symbol/
 #Type in the relevant species followed by a "/" Example: "saccharomyces_cerevisiae/"

@@ Line 1: / Line 1: @@
 ==Electronic workbook==
 First, we downloaded three files with different file extensions: .xlsx, .graphml, and .sif. The three files are:
@@ Line 43: / Line 46: @@
 ===Test 18===
 First, we went to GRNsight and imported the graphML file. We checked to see if any of the nodes would go outside of the view port window if we decreased zoom, when the view port window was deselected. We did this by dragging the zoom slider. The test '''PASSED''' with no errors accounting for the understanding that the actual view port deselection is buggy in itself (Noted in tests 4-6)

@@ Line 20: / Line 20: @@
 First, we went to GRNsight and imported the GraphML file. We checked to see if any of the nodes would go outside of the view port window if it were to be unchecked. We did this by dragging the nodes trying to bring them outside of the view port. The test '''FAILED''' with the following errors: Unable to move nodes outside of the box on the right, top, and left, but was able to on the bottom. Below is an example image: [[File:Test5_biodb_zv.PNG | 800x800px]]
 ===Test 7===
-First, we went to GRNsight and opened the excel file. We checked to see if any of the nodes would go outside of the view port window if we zoomed, when the view port window was selected. We did this by dragging the zoom slider. The test '''PASSED''' with no errors.
+First, we went to GRNsight and opened the excel file. We checked to see if any of the nodes would go outside of the view port window if we zoom, when the view port window was selected. We did this by dragging the zoom slider. The test '''PASSED''' with no errors.
 ===Test 8===
-First, we went to GRNsight and imported the sif file. We checked to see if any of the nodes would go outside of the view port window if we zoomed, when the view port window was selected. We did this by dragging the zoom slider. The test '''PASSED''' with no errors.
+First, we went to GRNsight and imported the sif file. We checked to see if any of the nodes would go outside of the view port window if we zoom, when the view port window was selected. We did this by dragging the zoom slider. The test '''PASSED''' with no errors.
 ===Test 9===
-First, we went to GRNsight and imported the GraphML file. We checked to see if any of the nodes would go outside of the view port window if we zoomed, when the view port window was selected. We did this by dragging the zoom slider. The test '''PASSED''' with no errors.
+First, we went to GRNsight and imported the GraphML file. We checked to see if any of the nodes would go outside of the view port window if we zoom, when the view port window was selected. We did this by dragging the zoom slider. The test '''PASSED''' with no errors.

@@ Line 18: / Line 18: @@
 First, we went to GRNsight and imported the Sif file. We checked to see if any of the nodes would go outside of the view port window if it were to be unchecked. We did this by dragging the nodes trying to bring them outside of the view port. The test '''FAILED''' with the following errors: Unable to move nodes outside of the box on the right, top, and left, but was able to on the bottom. Below is an example image: [[File:Test4_biodb_zv.PNG | 800x800px]]
 ===Test 6===
-First, we went to GRNsight and imported the GraphML file. We checked to see if any of the nodes would go outside of the view port window if it were to be unchecked. We did this by dragging the nodes trying to bring them outside of the view port. The test '''FAILED''' with the following errors: Unable to move nodes outside of the box on the right, top, and left, but was able to on the bottom. Below is an example image: [[File:Test4_biodb_zv.PNG | 800x800px]]
+First, we went to GRNsight and imported the GraphML file. We checked to see if any of the nodes would go outside of the view port window if it were to be unchecked. We did this by dragging the nodes trying to bring them outside of the view port. The test '''FAILED''' with the following errors: Unable to move nodes outside of the box on the right, top, and left, but was able to on the bottom. Below is an example image: [[File:Test5_biodb_zv.PNG | 800x800px]]