Difference between revisions of "Simonwro120 Week 2"
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=Journal Week 2= | =Journal Week 2= | ||
==Genetic Code== | ==Genetic Code== | ||
| − | ===Original Sequence=== | + | ===Original DNA Sequence=== |
5’-cgtatgctaataccatgttccgcgtataacccagccgccagttccgctggcggcatttta-3’<br> | 5’-cgtatgctaataccatgttccgcgtataacccagccgccagttccgctggcggcatttta-3’<br> | ||
| − | ===Complementary Sequence=== | + | ===Complementary DNA Sequence=== |
| − | + | 3’-gcatacgattatggtacaaggcgcatattgggtcggcggtcaaggcgaccgccgtaaaat-5’ | |
| − | '''Original Frame 1''' | + | '''Original Frame +1''' |
5’-cgt-atg-cta-ata-cca-tgt-tcc-gcg-tat-aac-cca-gcc-gcc-agt-tcc-gct-ggc-ggc-att-tta-3’ | 5’-cgt-atg-cta-ata-cca-tgt-tcc-gcg-tat-aac-cca-gcc-gcc-agt-tcc-gct-ggc-ggc-att-tta-3’ | ||
| − | 5'-R-M-L-Y | + | 5'-R-M-L-I-P-C-S-A-Y-N-P-A-A-S-S-A-G-G-I-L-3’ |
| − | '''Original Frame 2''' | + | *This reading frame is open and 20 amino acids long |
| + | '''Original Frame +2''' | ||
5’-cg-tat-gct-aat-acc-atg-ttc-cgc-gta-taa-ccc-agc-cgc-cag-ttc-cgc-tgg-cgg-cat-ttt-a-3’ | 5’-cg-tat-gct-aat-acc-atg-ttc-cgc-gta-taa-ccc-agc-cgc-cag-ttc-cgc-tgg-cgg-cat-ttt-a-3’ | ||
| − | '''Original Frame 3''' | + | 5’-Y-A-N-T-M-F-R-V-3' |
| + | *This reading frame is closed and 8 amino acids long | ||
| + | '''Original Frame +3''' | ||
5’-c-gta-tgc-taa-tac-cat-gtt-ccg-cgt-ata-acc-cag-ccg-cca-gtt-ccg-ctg-gcg-gca-ttt-ta-3’ | 5’-c-gta-tgc-taa-tac-cat-gtt-ccg-cgt-ata-acc-cag-ccg-cca-gtt-ccg-ctg-gcg-gca-ttt-ta-3’ | ||
| + | 5’-V-C-3’ | ||
| + | *This reading frame is closed and has 2 amino acids | ||
| + | |||
| + | ===Complementary RNA Strand=== | ||
| + | 3'-gcauacgauuaugguacaaggcgcauauugggucggcggucaaggcgaccgccguaaaau-5' | ||
| + | ''Flipped to be read from 5' to 3' | ||
| + | 5'-uaaaaugccgccagcggaacuggcggcuggguuauacgcggaacaugguauuagcauacg-3' | ||
| + | '''Complementary Frame -1''' | ||
| + | 5'-uaa-aau-gcc-gcc-agc-gga-acu-ggc-ggc-ugg-guu-aua-cgc-gga-aca-ugg-uau-uag-cau-acg-3' <br> | ||
| + | *First codon is a stop codon so the reading frame is closed | ||
| + | '''Complementary Frame -2''' | ||
| + | 5'-ua-aaa-ugc-cgc-cag-cgg-aac-ugg-cgg-cug-ggu-uau-acg-cgg-aac-aug-gua-uua-gca-uac-g-3' <br> | ||
| + | 5'-K-C-R-Q-R-N-W-R-L-G-Y-T-R-N-M-V-L-A-Y-3' | ||
| + | *This reading frame is open and 19 amino acids long | ||
| + | '''Complementary Frame -3''' | ||
| + | 5'-u-aaa-aug-ccg-cca-gcg-gaa-cug-gcg-gcu-ggg-uua-uac-gcg-gaa-cau-ggu-auu-agc-aua-cg-3' <br> | ||
| + | 5'-K-M-P-P-A-E-L-A-A-G-L-Y-A-E-H-G-I-S-I-3' | ||
| + | *This reading frame is open and 19 amino acids long | ||
| + | |||
| + | ==Acknowledgements== | ||
| + | Worked with group partner Katie at [[User:kwrigh35 | Katie's Homepage]] | ||
| + | All original journal entries came from me. [[User:Simonwro120|Simonwro120]] ([[User talk:Simonwro120|talk]]) 13:28, 11 September 2017 (PDT) | ||
| + | Dr. Dondi, and Dr. Dahlquist lectures | ||
| + | |||
| + | ==References== | ||
| + | *LMU BioDB 2017. (2017). Week 2. Retrieved September 8, 2017, from [https://xmlpipedb.cs.lmu.edu/biodb/fall2017/index.php/Week_2] | ||
| + | |||
| + | {{simonwro120}} | ||
| + | |||
| + | |||
| + | [[Category:Journal Entry]] | ||
Latest revision as of 01:42, 18 September 2017
Contents
Journal Week 2
Genetic Code
Original DNA Sequence
5’-cgtatgctaataccatgttccgcgtataacccagccgccagttccgctggcggcatttta-3’
Complementary DNA Sequence
3’-gcatacgattatggtacaaggcgcatattgggtcggcggtcaaggcgaccgccgtaaaat-5’
Original Frame +1
5’-cgt-atg-cta-ata-cca-tgt-tcc-gcg-tat-aac-cca-gcc-gcc-agt-tcc-gct-ggc-ggc-att-tta-3’ 5'-R-M-L-I-P-C-S-A-Y-N-P-A-A-S-S-A-G-G-I-L-3’ *This reading frame is open and 20 amino acids long
Original Frame +2
5’-cg-tat-gct-aat-acc-atg-ttc-cgc-gta-taa-ccc-agc-cgc-cag-ttc-cgc-tgg-cgg-cat-ttt-a-3’ 5’-Y-A-N-T-M-F-R-V-3' *This reading frame is closed and 8 amino acids long
Original Frame +3
5’-c-gta-tgc-taa-tac-cat-gtt-ccg-cgt-ata-acc-cag-ccg-cca-gtt-ccg-ctg-gcg-gca-ttt-ta-3’ 5’-V-C-3’ *This reading frame is closed and has 2 amino acids
Complementary RNA Strand
3'-gcauacgauuaugguacaaggcgcauauugggucggcggucaaggcgaccgccguaaaau-5' Flipped to be read from 5' to 3' 5'-uaaaaugccgccagcggaacuggcggcuggguuauacgcggaacaugguauuagcauacg-3'
Complementary Frame -1
5'-uaa-aau-gcc-gcc-agc-gga-acu-ggc-ggc-ugg-guu-aua-cgc-gga-aca-ugg-uau-uag-cau-acg-3'
*First codon is a stop codon so the reading frame is closed
Complementary Frame -2
5'-ua-aaa-ugc-cgc-cag-cgg-aac-ugg-cgg-cug-ggu-uau-acg-cgg-aac-aug-gua-uua-gca-uac-g-3'
5'-K-C-R-Q-R-N-W-R-L-G-Y-T-R-N-M-V-L-A-Y-3' *This reading frame is open and 19 amino acids long
Complementary Frame -3
5'-u-aaa-aug-ccg-cca-gcg-gaa-cug-gcg-gcu-ggg-uua-uac-gcg-gaa-cau-ggu-auu-agc-aua-cg-3'
5'-K-M-P-P-A-E-L-A-A-G-L-Y-A-E-H-G-I-S-I-3' *This reading frame is open and 19 amino acids long
Acknowledgements
Worked with group partner Katie at Katie's Homepage All original journal entries came from me. Simonwro120 (talk) 13:28, 11 September 2017 (PDT) Dr. Dondi, and Dr. Dahlquist lectures
References
- LMU BioDB 2017. (2017). Week 2. Retrieved September 8, 2017, from [1]
List of Assignments
Week 1 Week 2 Week 3 Week 4 Week 5 Week 6 Week 7 Week 8 Week 9 Week 10 Week 11 Week 12 Week 13 Week 14 Week 15
List of Journal Entries
Week 1 Week 2 Week 3 Week 4 Week 5 Week 6 Week 7 Week 8 Week 9 Week 10 Week 11 Week 12 Week 13 Week 14 Week 15
Week 1 Week 2 Week 3 Week 4 Week 5 Week 6 Week 7 Week 8 Week 9 Week 10 Week 11 Week 12 Week 13 Week 14 Week 15
