Difference between revisions of "Aporras1 Week 4"
From LMU BioDB 2017
(→Electronic Notebook: first set of notes from SGD on CLN1) |
(→Electronic Notebook: first set of notes from NCBI) |
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==Electronic Notebook== | ==Electronic Notebook== | ||
#I visited the SGD Database and we chose the CLN1 gene as the model organism. | #I visited the SGD Database and we chose the CLN1 gene as the model organism. | ||
| − | #First, searched through information on the SGD database: | + | #First, searched through information on the SGD database and found the following: |
#*Overview: regulation of cell cycle promoting first growth phase to S phase. | #*Overview: regulation of cell cycle promoting first growth phase to S phase. | ||
#*Found on chromosome XIII; also provides the sequence. | #*Found on chromosome XIII; also provides the sequence. | ||
| Line 14: | Line 14: | ||
#*Provides length of protein to be 546 a.a., PI to be 5.62, and molecular weight to be 62038.2 | #*Provides length of protein to be 546 a.a., PI to be 5.62, and molecular weight to be 62038.2 | ||
#*ANother observation on the website, it provides additional literature regarding the study of CLN1. | #*ANother observation on the website, it provides additional literature regarding the study of CLN1. | ||
| + | #I then searched on the NCBI Gene Database and gathered what I thought to be relevant information: | ||
| + | #*A protein coding gene also known as YMR199W | ||
| + | #*The genomic sequence is NC_001145.3 | ||
| + | #*Provides various interactions with other genes, however this list is extensive/exhaustive and not essential to understand the function of the gene. | ||
Revision as of 03:48, 26 September 2017
User Page: Antonio Porras
Assignment Page: Week 4
Electronic Notebook
- I visited the SGD Database and we chose the CLN1 gene as the model organism.
- First, searched through information on the SGD database and found the following:
- Overview: regulation of cell cycle promoting first growth phase to S phase.
- Found on chromosome XIII; also provides the sequence.
- Cyclin dependent protein kinase.
- Found within the nucleus and the cytoplasm.
- Encodes for a G1 cyclin which regulates the cell cycle.
- Cyclins are essential because they activate CDKs at the correct times within the cell cycle.
- Provides length of protein to be 546 a.a., PI to be 5.62, and molecular weight to be 62038.2
- ANother observation on the website, it provides additional literature regarding the study of CLN1.
- I then searched on the NCBI Gene Database and gathered what I thought to be relevant information:
- A protein coding gene also known as YMR199W
- The genomic sequence is NC_001145.3
- Provides various interactions with other genes, however this list is extensive/exhaustive and not essential to understand the function of the gene.
