Difference between revisions of "The Comparative Toxicogenomics Database"
From LMU BioDB 2017
m (→General Information: fixed external hyperlink syntax) |
(→General Information: fixed external hyperlink syntax AGAIN, added answer for question 2.2) |
||
| Line 1: | Line 1: | ||
==General Information== | ==General Information== | ||
| − | #[[http://ctdbase.org/ | + | #[[http://ctdbase.org/ The Comparative Toxicogenomics Database]] |
#This database stores information on how environmental toxins affect our health. | #This database stores information on how environmental toxins affect our health. | ||
| − | ## "It provides manually curated information about chemical–gene/protein interactions, chemical–disease and gene–disease relationships." [[http://ctdbase.org/about/ | + | ## "It provides manually curated information about chemical–gene/protein interactions, chemical–disease and gene–disease relationships." [[http://ctdbase.org/about/ About CTDbase]] A complete list of types of data includes: |
##*Chemicals | ##*Chemicals | ||
##*Diseases | ##*Diseases | ||
| Line 14: | Line 14: | ||
##*Exposure Studies Query | ##*Exposure Studies Query | ||
##*Exposure Details Query | ##*Exposure Details Query | ||
| − | ## The data is manually curated by | + | ## The data is manually curated by a team of 5 database [[http://ctdbase.org/about/personnel.jsp personnel]]. This database has secondary [[http://ctdbase.org/about/dataStatus.go data]] integrated from the following resources: |
| + | ##*BioGRID (3.4.151 release) | ||
| + | ##*ChemIDplus® (as of August 18, 2017) | ||
| + | ##*DrugBank (as of August 18, 2017) | ||
| + | ##*GO (as of August 18, 2017) | ||
| + | ##*KEGG (as of August 18, 2017) | ||
| + | ##*MeSH® (2016 MeSH release) | ||
| + | ##*NCBI Gene (as of August 18, 2017) | ||
| + | ##*NCBI Taxonomy (as of August 18, 2017) | ||
| + | ##*PubMed® (as of August 18, 2017) | ||
| + | ##*Reactome (as of August 18, 2017) | ||
==Scientific Quality== | ==Scientific Quality== | ||
Revision as of 18:58, 29 September 2017
Contents
General Information
- [The Comparative Toxicogenomics Database]
- This database stores information on how environmental toxins affect our health.
- "It provides manually curated information about chemical–gene/protein interactions, chemical–disease and gene–disease relationships." [About CTDbase] A complete list of types of data includes:
- Chemicals
- Diseases
- Genes
- Chemical-Gene Interactions
- References
- Gene Ontology
- Pathways
- Organisms
- Batch Query
- Exposure Studies Query
- Exposure Details Query
- The data is manually curated by a team of 5 database [personnel]. This database has secondary [data] integrated from the following resources:
- BioGRID (3.4.151 release)
- ChemIDplus® (as of August 18, 2017)
- DrugBank (as of August 18, 2017)
- GO (as of August 18, 2017)
- KEGG (as of August 18, 2017)
- MeSH® (2016 MeSH release)
- NCBI Gene (as of August 18, 2017)
- NCBI Taxonomy (as of August 18, 2017)
- PubMed® (as of August 18, 2017)
- Reactome (as of August 18, 2017)
- "It provides manually curated information about chemical–gene/protein interactions, chemical–disease and gene–disease relationships." [About CTDbase] A complete list of types of data includes:
Scientific Quality
General Utility
Summary Judgement
Electronic Notebook
Acknowledgements
References
Useful Links
| Category | Links |
|---|---|
| Interwiki | Main Page Katie Wright Course schedule Lights, Camera, InterACTION! |
| Katie Wright Weekly Assignment |
Week 2 Week 3 Week 4 Week 5 Week 6 Week 7 Week 8 Week 9🎃 Week 10 Week 11 Week 12 Week 13 Week 14 Week 15 |
| Weekly Assignment Instructions |
Week 1 Week 2 Week 3 Week 4 Week 5 Week 6 Week 7 Week 8 Week 9 Week 10 Week 11 Week 12 Week 14 Week 15 |
| Class Journals | Week 1 Week 2 Week 3 Week 4 Week 5 Week 6 Week 7 Week 8 Week 9 Week 10 Week 11 Week 12 Week 13 Week 14 |
