Difference between revisions of "Cwong34 Week 9"
From LMU BioDB 2017
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=GRNsight= | =GRNsight= | ||
+ | |||
+ | [https://github.com/dondi/GRNsight/blob/beta/test-files/demo-files/21-genes_50-edges_Dahlquist-data_estimation_output.xlsx XLSX file] | ||
+ | |||
+ | [https://github.com/dondi/GRNsight/blob/beta/test-files/demo-files/21-genes_31-edges_Schade-data_input.sif SIF file] | ||
+ | |||
+ | [https://github.com/dondi/GRNsight/blob/beta/test-files/demo-files/21-genes_31-edges_Schade-data_estimation_output_unweighted.graphml GRAPHML file] | ||
+ | |||
+ | Last Updated: 2017-10-23 | ||
+ | ; Test 1 | ||
+ | : Instructions: | ||
+ | :* Load Graph - File Menu -> Open | ||
+ | : Results: | ||
+ | :* GRNsight should lay out a network graph from the Excel workbook if there are no errors in the file | ||
+ | : '''Conclusions:''' | ||
+ | :* | ||
+ | ; Test 2 | ||
+ | : Instructions: | ||
+ | :* Load Graph - File Menu -> Import SIF | ||
+ | : Results: | ||
+ | :* GRNsight should lay out a network graph from the SIF file if there are no errors in the file | ||
+ | : '''Conclusions:''' | ||
+ | :* | ||
+ | ; Test 3 | ||
+ | : Instructions: | ||
+ | :* Load Graph - File Menu -> Import GraphML | ||
+ | : Results: | ||
+ | :* GRNsight should lay out a network graph from the GraphML file if there are no errors in the file | ||
+ | : '''Conclusions:''' | ||
+ | :* | ||
+ | ; Test 4 | ||
+ | : Instructions: | ||
+ | :* Load Graph - File Menu -> Open | ||
+ | :* D-Pad Control - Click Right Arrow | ||
+ | : Results: | ||
+ | :* GRNsight should lay out a network graph from the Excel workbook if there are no errors in the file | ||
+ | :* if "Restrict Graph to Viewport" is Unchecked., The graph should shift to the left | ||
+ | : '''Conclusions:''' | ||
+ | :* | ||
+ | ; Test 5 | ||
+ | : Instructions: | ||
+ | :* Load Graph - File Menu -> Import SIF | ||
+ | :* D-Pad Control - Click Right Arrow | ||
+ | : Results: | ||
+ | :* GRNsight should lay out a network graph from the SIF file if there are no errors in the file | ||
+ | :* if "Restrict Graph to Viewport" is Unchecked., The graph should shift to the left | ||
+ | : '''Conclusions:''' | ||
+ | :* | ||
+ | ; Test 6 | ||
+ | : Instructions: | ||
+ | :* Load Graph - File Menu -> Import GraphML | ||
+ | :* D-Pad Control - Click Right Arrow | ||
+ | : Results: | ||
+ | :* GRNsight should lay out a network graph from the GraphML file if there are no errors in the file | ||
+ | :* if "Restrict Graph to Viewport" is Unchecked., The graph should shift to the left | ||
+ | : '''Conclusions:''' | ||
+ | :* | ||
+ | ; Test 7 | ||
+ | : Instructions: | ||
+ | :* Load Graph - File Menu -> Open | ||
+ | :* D-Pad Control - Click Left Arrow | ||
+ | : Results: | ||
+ | :* GRNsight should lay out a network graph from the Excel workbook if there are no errors in the file | ||
+ | :* if "Restrict Graph to Viewport" is Unchecked., The graph should shift to the right | ||
+ | : '''Conclusions:''' | ||
+ | :* | ||
+ | ; Test 8 | ||
+ | : Instructions: | ||
+ | :* Load Graph - File Menu -> Import SIF | ||
+ | :* D-Pad Control - Click Left Arrow | ||
+ | : Results: | ||
+ | :* GRNsight should lay out a network graph from the SIF file if there are no errors in the file | ||
+ | :* if "Restrict Graph to Viewport" is Unchecked., The graph should shift to the right | ||
+ | : '''Conclusions:''' | ||
+ | :* | ||
+ | ; Test 9 | ||
+ | : Instructions: | ||
+ | :* Load Graph - File Menu -> Import GraphML | ||
+ | :* D-Pad Control - Click Left Arrow | ||
+ | : Results: | ||
+ | :* GRNsight should lay out a network graph from the GraphML file if there are no errors in the file | ||
+ | :* if "Restrict Graph to Viewport" is Unchecked., The graph should shift to the right | ||
+ | : '''Conclusions:''' | ||
+ | :* | ||
+ | ; Test 10 | ||
+ | : Instructions: | ||
+ | :* Load Graph - File Menu -> Open | ||
+ | :* D-Pad Control - Click Up Arrow | ||
+ | : Results: | ||
+ | :* GRNsight should lay out a network graph from the Excel workbook if there are no errors in the file | ||
+ | :* if "Restrict Graph to Viewport" is Unchecked., The graph should shift down | ||
+ | : '''Conclusions:''' | ||
+ | :* | ||
+ | ; Test 11 | ||
+ | : Instructions: | ||
+ | :* Load Graph - File Menu -> Import SIF | ||
+ | :* D-Pad Control - Click Up Arrow | ||
+ | : Results: | ||
+ | :* GRNsight should lay out a network graph from the SIF file if there are no errors in the file | ||
+ | :* if "Restrict Graph to Viewport" is Unchecked., The graph should shift down | ||
+ | : '''Conclusions:''' | ||
+ | :* | ||
+ | ; Test 12 | ||
+ | : Instructions: | ||
+ | :* Load Graph - File Menu -> Import GraphML | ||
+ | :* D-Pad Control - Click Up Arrow | ||
+ | : Results: | ||
+ | :* GRNsight should lay out a network graph from the GraphML file if there are no errors in the file | ||
+ | :* if "Restrict Graph to Viewport" is Unchecked., The graph should shift down | ||
+ | : '''Conclusions:''' | ||
+ | :* | ||
+ | ; Test 13 | ||
+ | : Instructions: | ||
+ | :* Load Graph - File Menu -> Open | ||
+ | :* D-Pad Control - Click Down Arrow | ||
+ | : Results: | ||
+ | :* GRNsight should lay out a network graph from the Excel workbook if there are no errors in the file | ||
+ | :* if "Restrict Graph to Viewport" is Unchecked., The graph should shift up | ||
+ | : '''Conclusions:''' | ||
+ | :* | ||
+ | ; Test 14 | ||
+ | : Instructions: | ||
+ | :* Load Graph - File Menu -> Import SIF | ||
+ | :* D-Pad Control - Click Down Arrow | ||
+ | : Results: | ||
+ | :* GRNsight should lay out a network graph from the SIF file if there are no errors in the file | ||
+ | :* if "Restrict Graph to Viewport" is Unchecked., The graph should shift up | ||
+ | : '''Conclusions:''' | ||
+ | :* | ||
+ | ; Test 15 | ||
+ | : Instructions: | ||
+ | :* Load Graph - File Menu -> Import GraphML | ||
+ | :* D-Pad Control - Click Down Arrow | ||
+ | : Results: | ||
+ | :* GRNsight should lay out a network graph from the GraphML file if there are no errors in the file | ||
+ | :* if "Restrict Graph to Viewport" is Unchecked., The graph should shift up | ||
+ | : '''Conclusions:''' | ||
+ | :* | ||
+ | ; Test 16 | ||
+ | : Instructions: | ||
+ | :* Load Graph - File Menu -> Open | ||
+ | :* D-Pad Control - Click Center Button | ||
+ | : Results: | ||
+ | :* GRNsight should lay out a network graph from the Excel workbook if there are no errors in the file | ||
+ | :* if "Restrict Graph to Viewport" is Unchecked., The graph should move to the center of the bounding box (note that it is not the same thing as the viewport | ||
+ | : '''Conclusions:''' | ||
+ | :* | ||
+ | ; Test 17 | ||
+ | : Instructions: | ||
+ | :* Load Graph - File Menu -> Import SIF | ||
+ | :* D-Pad Control - Click Center Button | ||
+ | : Results: | ||
+ | :* GRNsight should lay out a network graph from the SIF file if there are no errors in the file | ||
+ | :* if "Restrict Graph to Viewport" is Unchecked., The graph should move to the center of the bounding box (note that it is not the same thing as the viewport | ||
+ | : '''Conclusions:''' | ||
+ | :* | ||
+ | ; Test 18 | ||
+ | : Instructions: | ||
+ | :* Load Graph - File Menu -> Import GraphML | ||
+ | :* D-Pad Control - Click Center Button | ||
+ | : Results: | ||
+ | :* GRNsight should lay out a network graph from the GraphML file if there are no errors in the file | ||
+ | :* if "Restrict Graph to Viewport" is Unchecked., The graph should move to the center of the bounding box (note that it is not the same thing as the viewport | ||
+ | : '''Conclusions:''' | ||
+ | :* | ||
=API Exploration= | =API Exploration= |
Revision as of 21:18, 28 October 2017
GRNsight
Last Updated: 2017-10-23
- Test 1
- Instructions:
- Load Graph - File Menu -> Open
- Results:
- GRNsight should lay out a network graph from the Excel workbook if there are no errors in the file
- Conclusions:
- Test 2
- Instructions:
- Load Graph - File Menu -> Import SIF
- Results:
- GRNsight should lay out a network graph from the SIF file if there are no errors in the file
- Conclusions:
- Test 3
- Instructions:
- Load Graph - File Menu -> Import GraphML
- Results:
- GRNsight should lay out a network graph from the GraphML file if there are no errors in the file
- Conclusions:
- Test 4
- Instructions:
- Load Graph - File Menu -> Open
- D-Pad Control - Click Right Arrow
- Results:
- GRNsight should lay out a network graph from the Excel workbook if there are no errors in the file
- if "Restrict Graph to Viewport" is Unchecked., The graph should shift to the left
- Conclusions:
- Test 5
- Instructions:
- Load Graph - File Menu -> Import SIF
- D-Pad Control - Click Right Arrow
- Results:
- GRNsight should lay out a network graph from the SIF file if there are no errors in the file
- if "Restrict Graph to Viewport" is Unchecked., The graph should shift to the left
- Conclusions:
- Test 6
- Instructions:
- Load Graph - File Menu -> Import GraphML
- D-Pad Control - Click Right Arrow
- Results:
- GRNsight should lay out a network graph from the GraphML file if there are no errors in the file
- if "Restrict Graph to Viewport" is Unchecked., The graph should shift to the left
- Conclusions:
- Test 7
- Instructions:
- Load Graph - File Menu -> Open
- D-Pad Control - Click Left Arrow
- Results:
- GRNsight should lay out a network graph from the Excel workbook if there are no errors in the file
- if "Restrict Graph to Viewport" is Unchecked., The graph should shift to the right
- Conclusions:
- Test 8
- Instructions:
- Load Graph - File Menu -> Import SIF
- D-Pad Control - Click Left Arrow
- Results:
- GRNsight should lay out a network graph from the SIF file if there are no errors in the file
- if "Restrict Graph to Viewport" is Unchecked., The graph should shift to the right
- Conclusions:
- Test 9
- Instructions:
- Load Graph - File Menu -> Import GraphML
- D-Pad Control - Click Left Arrow
- Results:
- GRNsight should lay out a network graph from the GraphML file if there are no errors in the file
- if "Restrict Graph to Viewport" is Unchecked., The graph should shift to the right
- Conclusions:
- Test 10
- Instructions:
- Load Graph - File Menu -> Open
- D-Pad Control - Click Up Arrow
- Results:
- GRNsight should lay out a network graph from the Excel workbook if there are no errors in the file
- if "Restrict Graph to Viewport" is Unchecked., The graph should shift down
- Conclusions:
- Test 11
- Instructions:
- Load Graph - File Menu -> Import SIF
- D-Pad Control - Click Up Arrow
- Results:
- GRNsight should lay out a network graph from the SIF file if there are no errors in the file
- if "Restrict Graph to Viewport" is Unchecked., The graph should shift down
- Conclusions:
- Test 12
- Instructions:
- Load Graph - File Menu -> Import GraphML
- D-Pad Control - Click Up Arrow
- Results:
- GRNsight should lay out a network graph from the GraphML file if there are no errors in the file
- if "Restrict Graph to Viewport" is Unchecked., The graph should shift down
- Conclusions:
- Test 13
- Instructions:
- Load Graph - File Menu -> Open
- D-Pad Control - Click Down Arrow
- Results:
- GRNsight should lay out a network graph from the Excel workbook if there are no errors in the file
- if "Restrict Graph to Viewport" is Unchecked., The graph should shift up
- Conclusions:
- Test 14
- Instructions:
- Load Graph - File Menu -> Import SIF
- D-Pad Control - Click Down Arrow
- Results:
- GRNsight should lay out a network graph from the SIF file if there are no errors in the file
- if "Restrict Graph to Viewport" is Unchecked., The graph should shift up
- Conclusions:
- Test 15
- Instructions:
- Load Graph - File Menu -> Import GraphML
- D-Pad Control - Click Down Arrow
- Results:
- GRNsight should lay out a network graph from the GraphML file if there are no errors in the file
- if "Restrict Graph to Viewport" is Unchecked., The graph should shift up
- Conclusions:
- Test 16
- Instructions:
- Load Graph - File Menu -> Open
- D-Pad Control - Click Center Button
- Results:
- GRNsight should lay out a network graph from the Excel workbook if there are no errors in the file
- if "Restrict Graph to Viewport" is Unchecked., The graph should move to the center of the bounding box (note that it is not the same thing as the viewport
- Conclusions:
- Test 17
- Instructions:
- Load Graph - File Menu -> Import SIF
- D-Pad Control - Click Center Button
- Results:
- GRNsight should lay out a network graph from the SIF file if there are no errors in the file
- if "Restrict Graph to Viewport" is Unchecked., The graph should move to the center of the bounding box (note that it is not the same thing as the viewport
- Conclusions:
- Test 18
- Instructions:
- Load Graph - File Menu -> Import GraphML
- D-Pad Control - Click Center Button
- Results:
- GRNsight should lay out a network graph from the GraphML file if there are no errors in the file
- if "Restrict Graph to Viewport" is Unchecked., The graph should move to the center of the bounding box (note that it is not the same thing as the viewport
- Conclusions:
API Exploration
Acknowledgmenets
References
BIOL/CMSI 367-01: Biological Databases Fall 2017
Assignments
- Week 1
- Week 2
- Week 3
- Week 4
- Week 5
- Week 6
- Week 7
- Week 8
- Week 9
- Week 10
- Week 11
- Week 12
- Week 14
- Week 15
Journal Entries:
- cwong34 Week 2
- cwong34 Week 3
- cwong34 Week 4
- cwong34 Week 5
- cwong34 Week 6
- cwong34 Week 7
- cwong34 Week 8
- cwong34 Week 9
- cwong34 Week 10
- cwong34 Week 11
- cwong34 Week 12
- cwong34 Week 14
- cwong34 Week 15
Shared Journals:
- cwong34 Week 1 Journal
- cwong34 Week 2 Journal
- cwong34 Week 3 Journal
- cwong34 Week 4 Journal
- cwong34 Week 5 Journal
- cwong34 Week 6 Journal
- cwong34 Week 7 Journal
- cwong34 Week 8 Journal
- cwong34 Week 9 Journal
- cwong34 Week 10 Journal
Group Project