Difference between revisions of "JASPAR the Friendly Ghost"

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(→‎Quinn's Executive Summary: spelling error)
(→‎Antonio's Executive Summary: summary)
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====Antonio's Executive Summary====
 
====Antonio's Executive Summary====
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Created two citations for the bibliography:
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Sahara, T., Goda, T., & Ohgiya, S. (2002). Comprehensive expression analysis of time-dependent genetic responses in yeast cells to low temperature. Journal of Biological Chemistry, 277(51), 50015-50021.
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* PubMed Abstract: https://www.ncbi.nlm.nih.gov/pubmed/?term=Comprehensive+Expression+Analysis+of+Time-dependent+Genetic+Responses+in+Yeast+Cells+to+Low+Temperature
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* PubMed Central: No PubMed Central Article
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* Publisher Full Text (HTML): http://www.jbc.org/content/277/51/50015.full
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* Publisher Full Text (PDF): http://www.jbc.org/content/277/51/50015.full.pdf
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* Copyright: 2002 by the Authors (found on PDF) and Copyright © 2017 American Society for Biochemistry and Molecular Biology
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* Publisher: JBC Papers in Press, October 11, 2002, DOI 10.1074/jbc.M209258200
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* Availability: In print and Online
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* Did LMU pay a fee for this article: No
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* Is the dataset available? Figures and tables have certain data but was unable to find a download for raw data.
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Homma, T., Iwahashi, H., & Komatsu, Y. (2003). Yeast gene expression during growth at low temperature. Cryobiology, 46(3), 230-237.
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* PubMed Abstract: https://www.ncbi.nlm.nih.gov/pubmed/12818212
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* PubMed Central: No PubMed Central Article
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* Publisher Full Text (HTML): http://www.sciencedirect.com/science/article/pii/S0011224003000282#aep-section-id17
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* Publisher Full Text (PDF): https://www.sciencedirect.com/science/article/pii/S0011224003000282/pdfft?md5=5827d4b1e460343cb3fbc58cd603e691&pid=1-s2.0-S0011224003000282-main.pdf
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* Copyright: 2002 by Authors (found on PDF) and Copyright © 2003 Elsevier Science (USA). All rights reserved.
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* Publisher: Cryobiology. 2003 Jun;46(3):230-7.
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* Availability: In print and Online
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* Did LMU pay a fee for this article: No
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* Is the dataset available? Figures and tables have certain data but was unable to find a download for raw data.
 +
 +
I also completed the basic keyword searches on PubMed, Google Scholar, and Web of Science along with the advanced searches and the respective results. Lastly, I completed the prospective searches and collected the results of how many articles the article cites and how many articles cite the article. Totaling to the 3 articles.
  
 
====Eddie Bachoura's Executive Summary====
 
====Eddie Bachoura's Executive Summary====

Revision as of 01:22, 14 November 2017

Executive Summaries

Week 11

Quinn's Executive Summary

Created citations for two entries in the annotated bibliography for papers that report microarray data from yeast subjected to cold shock:

Dahlquist, K.D., Fitzpatrick, B.G., Camacho, E.T., Entzminger, S.D., & Wanner, N.C. (2015). Parameter Estimation for Gene Regulatory Networks from Microarray Data: Cold Shock Response in Saccharomyces cerevisiae. Bulletin of Mathematical Biology, 77(8), 1457–1492. doi: 10.1007/s11538-015-0092-6
Becerra, M., Lombardia, L.J., Gonzalez-Siso, M.I., Rodriguez-Belmonte, E., Hauser, N.C., & Cerdan, M.E. (2003). Genome-wide analysis of the yeast transcriptome upon heat and cold shock. Comparative and Functional Genomics, 4(4), 366-375. doi: 10.1002/cfg.301

Also completed a search activity to compare the results found from PubMed, GoogleScholar, and Web of Science using both basic and advanced search tools.
Individual Journal Page: QLanners Week 11

Simon's Executive Summary

Antonio's Executive Summary

Created two citations for the bibliography:

Sahara, T., Goda, T., & Ohgiya, S. (2002). Comprehensive expression analysis of time-dependent genetic responses in yeast cells to low temperature. Journal of Biological Chemistry, 277(51), 50015-50021.

Homma, T., Iwahashi, H., & Komatsu, Y. (2003). Yeast gene expression during growth at low temperature. Cryobiology, 46(3), 230-237.

I also completed the basic keyword searches on PubMed, Google Scholar, and Web of Science along with the advanced searches and the respective results. Lastly, I completed the prospective searches and collected the results of how many articles the article cites and how many articles cite the article. Totaling to the 3 articles.

Eddie Bachoura's Executive Summary

Acknowledgements

References

  1. LMU BioDB 2017. (2017). Week 11. Retrieved November 07, 2017, from https://xmlpipedb.cs.lmu.edu/biodb/fall2017/index.php/Week_11

Links

Course Home Page
JASPAR the Friendly Ghost Team Page
JASPAR the Friendly Ghost Final GRNsight Deliverables Page
JASPAR Database
Team Member's Pages: Quinn Lanners Project Manager/QA | Antonio Porras Data Analyst | Eddie Bachoura Coder | Simon Wroblewski Coder
Instructors: Dr. Dondi | Dr. Dahlquist
Individual Journal Pages:

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