Difference between revisions of "Emmatyrnauer Week 11"
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===Annotated Bibliography=== | ===Annotated Bibliography=== | ||
====Paper 1==== | ====Paper 1==== | ||
| − | Homma, T., Iwahashi, H., & Komatsu, Y. (2003). Yeast gene expression during growth at low temperature. Cryobiology, 46(3), 230-237. | + | Homma, T., Iwahashi, H., & Komatsu, Y. (2003). Yeast gene expression during growth at low temperature. ''Cryobiology'', 46(3), 230-237. |
* PubMed Abstract: https://www.ncbi.nlm.nih.gov/pubmed/12818212 | * PubMed Abstract: https://www.ncbi.nlm.nih.gov/pubmed/12818212 | ||
* PubMed Central: not available | * PubMed Central: not available | ||
* Publisher Full Text (HTML): http://sq4ya5rf2q.search.serialssolutions.com/?V=1.0&sid=PubMed:LinkOut&pmid=12818212 | * Publisher Full Text (HTML): http://sq4ya5rf2q.search.serialssolutions.com/?V=1.0&sid=PubMed:LinkOut&pmid=12818212 | ||
* Publisher Full Text (PDF): https://electra.lmu.edu:3555/S0011224003000282/1-s2.0-S0011224003000282-main.pdf?_tid=4c9b7cc0-c775-11e7-af71-00000aab0f26&acdnat=1510469407_3e02bee4266fd6a211ea3f6e27b460cf | * Publisher Full Text (PDF): https://electra.lmu.edu:3555/S0011224003000282/1-s2.0-S0011224003000282-main.pdf?_tid=4c9b7cc0-c775-11e7-af71-00000aab0f26&acdnat=1510469407_3e02bee4266fd6a211ea3f6e27b460cf | ||
| − | * Copyright: 2003 by | + | * Copyright: 2003 by Science Direct; article is not Open Access |
* Publisher: Elsevier Science | * Publisher: Elsevier Science | ||
* Availability: online at www.sciencedirect.com | * Availability: online at www.sciencedirect.com | ||
| Line 25: | Line 25: | ||
====Paper 2==== | ====Paper 2==== | ||
| − | + | Murata, Y., Homma, T., Kitagawa, E., Momose, Y., Sato, M. S., Odani, M., ... & Fujita, K. (2006). Genome-wide expression analysis of yeast response during exposure to 4 C. ''Extremophiles'', 10(2), 117-128. | |
| − | * PubMed Abstract: https://www.ncbi.nlm.nih.gov/pubmed/ | + | * PubMed Abstract: https://www.ncbi.nlm.nih.gov/pubmed/?term=Genome-wide+expression+analysis+of+yeast+response+during+exposure+to+4+degrees+C |
| − | * PubMed Central: | + | * PubMed Central: not available |
| − | * Publisher Full Text (HTML): | + | * Publisher Full Text (HTML): https://electra.lmu.edu:2529/article/10.1007/s00792-005-0480-1 |
| − | * Publisher Full Text (PDF): http:// | + | * Publisher Full Text (PDF): http://sq4ya5rf2q.search.serialssolutions.com/?V=1.0&sid=PubMed:LinkOut&pmid=16254683 |
| − | * Copyright: | + | * Copyright: 2005 by Springer-Verlag; article is not Open Access |
| − | * Publisher: | + | * Publisher: Springer-Verlag |
| − | * Availability: | + | * Availability: online |
| − | * Did LMU pay a fee for this article: | + | * Did LMU pay a fee for this article: yes |
| + | |||
| + | '''''Complete annotated bibliography can be found on the Lights, Camera, InterACTION! [[Lights, Camera, InterACTION!| homepage]]'''.'' | ||
===Keyword Searches=== | ===Keyword Searches=== | ||
| + | '''''Note: Answers are bolded'''''<br> | ||
Use a keyword search for the first three databases/tools and answer the following: | Use a keyword search for the first three databases/tools and answer the following: | ||
#PubMed | #PubMed | ||
| − | #*What original keyword(s) did you use? "yeast cold shock" | + | #*What original keyword(s) did you use? '''"yeast cold shock"''' |
| − | #*How many results did you get? 108 | + | #*How many results did you get? '''108''' |
| − | #*Which terms in which combinations were most useful to narrow down the search? "yeast cold shock microarray data" | + | #*Which terms in which combinations were most useful to narrow down the search? '''"yeast cold shock microarray data"''' |
| − | #*How many results did you get after narrowing the search? 4 | + | #*How many results did you get after narrowing the search? '''4''' |
#Google Scholar | #Google Scholar | ||
| − | #*What original keyword(s) did you use? "yeast response to cold shock" | + | #*What original keyword(s) did you use? '''"yeast response to cold shock"''' |
| − | #*How many results did you get? 204,000 | + | #*How many results did you get? '''204,000''' |
| − | #*Which terms in which combinations were most useful to narrow down the search? "microarray data from yeast subjected to cold shock." | + | #*Which terms in which combinations were most useful to narrow down the search? '''"microarray data from yeast subjected to cold shock."''' |
| − | #*How many results did you get after narrowing the search? 21,500 | + | #*How many results did you get after narrowing the search? '''21,500''' |
#Web of Science | #Web of Science | ||
| − | #*What original keyword(s) did you use? "yeast, cold shock" | + | #*What original keyword(s) did you use? '''"yeast, cold shock"''' |
| − | #*How many results did you get? 218 | + | #*How many results did you get? '''218''' |
| − | #*Which terms in which combinations were most useful to narrow down the search? "microarray data, yeast, cold shock" | + | #*Which terms in which combinations were most useful to narrow down the search? '''"microarray data, yeast, cold shock"''' |
| − | #*How many results did you get after narrowing the search? 4 | + | #*How many results did you get after narrowing the search? '''4''' |
Use the advanced search functions for each of these three databases/tools and answer the following: | Use the advanced search functions for each of these three databases/tools and answer the following: | ||
| − | [[File:Google_scholar_advanced_search_function_screenshot.png|500px|thumb|right|Advanced search function window for Google Scholar]] | + | [[File:Google_scholar_advanced_search_function_screenshot.png|500px|thumb|right| Image 1: Advanced search function window for Google Scholar]] |
| + | [[File:Webofscience_advanced_search.png|500px|thumb|right|Image 2: Advanced search function window for Web of Science]] | ||
#PubMed | #PubMed | ||
| − | #*Which advanced search functions were most useful to narrow down the search? the title function | + | #*Which advanced search functions were most useful to narrow down the search? '''the title function''' |
| − | #*How many results did you get? 22 | + | #*How many results did you get? '''22''' |
#Google Scholar | #Google Scholar | ||
| − | #*Which advanced search functions were most useful to narrow down the search? | + | #*Which advanced search functions were most useful to narrow down the search? '''Functions represented in Image 1''' |
| − | #*How many results did you get? 4,820 | + | #*How many results did you get? '''4,820''' |
#Web of Science | #Web of Science | ||
| − | #*Which advanced search functions were most useful to narrow down the search? | + | #*Which advanced search functions were most useful to narrow down the search? '''Functions represented in Image 2''' |
| − | #*How many results did you get? | + | #*How many results did you get? '''10''' |
===Prospective search results from Web of Science=== | ===Prospective search results from Web of Science=== | ||
| + | '''''Note: Answers are bolded'''''<br> | ||
Aguilera, J., Randez-Gil, F., & Prieto, J.A. (2007). Cold Response in Saccharomyces cerevisiae: New Functions for Old Mechanisms. FEMS Microbiological Reviews, 31, 327–341. doi: 10.1111/j.1574-6976.2007.00066.x | Aguilera, J., Randez-Gil, F., & Prieto, J.A. (2007). Cold Response in Saccharomyces cerevisiae: New Functions for Old Mechanisms. FEMS Microbiological Reviews, 31, 327–341. doi: 10.1111/j.1574-6976.2007.00066.x | ||
*How many articles does this article cite? '''144''' | *How many articles does this article cite? '''144''' | ||
| Line 78: | Line 83: | ||
==Acknowledgements== | ==Acknowledgements== | ||
| − | #I worked with my | + | #I worked with my group project partner [[User:Kwrigh35|Katie]] during class and over text to write the annotated bibliography. |
| + | #I worked with Katie, [[User: Zvanysse | Zach]], and [[User:Bhamilton18 | Blair]], to construct the our group page. | ||
#[[User:Kdahlquist|Dr. Dahlquist]] for explaining the process of creating annotated bibliographies | #[[User:Kdahlquist|Dr. Dahlquist]] for explaining the process of creating annotated bibliographies | ||
| − | #https://scholar.google.com/ | + | #[https://scholar.google.com/| Google Scholar] for research |
| − | #http://electra.lmu.edu:2179/WOS_GeneralSearch_input.do?product=WOS&search_mode=GeneralSearch&SID=4E3Uh6AVRsXU6VXtMbd&preferencesSaved= | + | #[http://electra.lmu.edu:2179/WOS_GeneralSearch_input.do?product=WOS&search_mode=GeneralSearch&SID=4E3Uh6AVRsXU6VXtMbd&preferencesSaved=| Web of Science] for research |
| − | #https://www.ncbi.nlm.nih.gov/pubmed/ | + | #[https://www.ncbi.nlm.nih.gov/pubmed/| Pub Med] for research |
While I worked with the people noted above, this individual journal entry was completed by me and not copied from another source. | While I worked with the people noted above, this individual journal entry was completed by me and not copied from another source. | ||
[[User:Emmatyrnauer|Emmatyrnauer]] ([[User talk:Emmatyrnauer|talk]]) 00:18, 12 November 2017 (PST) | [[User:Emmatyrnauer|Emmatyrnauer]] ([[User talk:Emmatyrnauer|talk]]) 00:18, 12 November 2017 (PST) | ||
Latest revision as of 07:07, 14 November 2017
Contents
Electronic Notebook
Example Annotated Bibliography
Schade, B., Jansen, G., Whiteway, M., Entian, K.D., & Thomas, D.Y. (2004). Cold Adaptation in Budding Yeast. Molecular Biology of the Cell, 15, 5492-5502. doi: 10.1091/mbc.E04-03-0167
- PubMed Abstract: http://www.ncbi.nlm.nih.gov/pubmed/15483057
- PubMed Central: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC532028/
- Publisher Full Text (HTML): http://www.molbiolcell.org/content/15/12/5492.long
- Publisher Full Text (PDF): http://www.molbiolcell.org/content/15/12/5492.full.pdf+html
- Copyright: 2004 by the American Society for Cell Biology (information found on PDF version of article); article is not Open Access, but is freely available 2 months after publication
- Publisher: American Society for Cell Biology (scientific society)
- Availability: in print and online
- Did LMU pay a fee for this article: no
Annotated Bibliography
Paper 1
Homma, T., Iwahashi, H., & Komatsu, Y. (2003). Yeast gene expression during growth at low temperature. Cryobiology, 46(3), 230-237.
- PubMed Abstract: https://www.ncbi.nlm.nih.gov/pubmed/12818212
- PubMed Central: not available
- Publisher Full Text (HTML): http://sq4ya5rf2q.search.serialssolutions.com/?V=1.0&sid=PubMed:LinkOut&pmid=12818212
- Publisher Full Text (PDF): https://electra.lmu.edu:3555/S0011224003000282/1-s2.0-S0011224003000282-main.pdf?_tid=4c9b7cc0-c775-11e7-af71-00000aab0f26&acdnat=1510469407_3e02bee4266fd6a211ea3f6e27b460cf
- Copyright: 2003 by Science Direct; article is not Open Access
- Publisher: Elsevier Science
- Availability: online at www.sciencedirect.com
- Did LMU pay a fee for this article: yes
Paper 2
Murata, Y., Homma, T., Kitagawa, E., Momose, Y., Sato, M. S., Odani, M., ... & Fujita, K. (2006). Genome-wide expression analysis of yeast response during exposure to 4 C. Extremophiles, 10(2), 117-128.
- PubMed Abstract: https://www.ncbi.nlm.nih.gov/pubmed/?term=Genome-wide+expression+analysis+of+yeast+response+during+exposure+to+4+degrees+C
- PubMed Central: not available
- Publisher Full Text (HTML): https://electra.lmu.edu:2529/article/10.1007/s00792-005-0480-1
- Publisher Full Text (PDF): http://sq4ya5rf2q.search.serialssolutions.com/?V=1.0&sid=PubMed:LinkOut&pmid=16254683
- Copyright: 2005 by Springer-Verlag; article is not Open Access
- Publisher: Springer-Verlag
- Availability: online
- Did LMU pay a fee for this article: yes
Complete annotated bibliography can be found on the Lights, Camera, InterACTION! homepage.
Keyword Searches
Note: Answers are bolded
Use a keyword search for the first three databases/tools and answer the following:
- PubMed
- What original keyword(s) did you use? "yeast cold shock"
- How many results did you get? 108
- Which terms in which combinations were most useful to narrow down the search? "yeast cold shock microarray data"
- How many results did you get after narrowing the search? 4
- Google Scholar
- What original keyword(s) did you use? "yeast response to cold shock"
- How many results did you get? 204,000
- Which terms in which combinations were most useful to narrow down the search? "microarray data from yeast subjected to cold shock."
- How many results did you get after narrowing the search? 21,500
- Web of Science
- What original keyword(s) did you use? "yeast, cold shock"
- How many results did you get? 218
- Which terms in which combinations were most useful to narrow down the search? "microarray data, yeast, cold shock"
- How many results did you get after narrowing the search? 4
Use the advanced search functions for each of these three databases/tools and answer the following:
- PubMed
- Which advanced search functions were most useful to narrow down the search? the title function
- How many results did you get? 22
- Google Scholar
- Which advanced search functions were most useful to narrow down the search? Functions represented in Image 1
- How many results did you get? 4,820
- Web of Science
- Which advanced search functions were most useful to narrow down the search? Functions represented in Image 2
- How many results did you get? 10
Prospective search results from Web of Science
Note: Answers are bolded
Aguilera, J., Randez-Gil, F., & Prieto, J.A. (2007). Cold Response in Saccharomyces cerevisiae: New Functions for Old Mechanisms. FEMS Microbiological Reviews, 31, 327–341. doi: 10.1111/j.1574-6976.2007.00066.x
- How many articles does this article cite? 144
- How many articles cite this article? 77
Al-Fageeh, M.B. & Smales, C.M. (2006). Control and Regulation of the Cellular Responses to Cold Shock: the Responses in Yeast and Mammalian Systems. Biochemical Journal, 397, 247–259. doi: 10.1042/BJ20060166
- How many articles does this article cite? 125
- How many articles cite this article? 108
Thieringer, H.A., Jones, P.G.,& Inouye, M. (1998). Cold shock and adaptation. BioEssays, 20, 49–57. doi: 10.1002/(SICI)1521-1878(199801)20:1<49::AID-BIES8>3.0.CO;2-N
- How many articles does this article cite? 76
- How many articles cite this article? 258
Acknowledgements
- I worked with my group project partner Katie during class and over text to write the annotated bibliography.
- I worked with Katie, Zach, and Blair, to construct the our group page.
- Dr. Dahlquist for explaining the process of creating annotated bibliographies
- Google Scholar for research
- Web of Science for research
- Pub Med for research
While I worked with the people noted above, this individual journal entry was completed by me and not copied from another source. Emmatyrnauer (talk) 00:18, 12 November 2017 (PST)
References
LMU BioDB 2017. (2017). Week 1. Retrieved August 29, 2017, from https://xmlpipedb.cs.lmu.edu/biodb/fall2017/index.php/Week_11
Links
- My User Page
- List of Assignments
- List of Journal Entries
- List of Shared Journal Entries
- Class Journal Week 1
- Class Journal Week 2
- Class Journal Week 3
- Class Journal Week 4
- Class Journal Week 5
- Class Journal Week 6
- Class Journal Week 7
- Class Journal Week 8
- Class Journal Week 9
- Class Journal Week 10
- Group Journal Week 11
- Group Journal Week 12
- no week 13
- Group Journal Week 14 (executive summary)
- Group Journal Week 14 (executive summary)
- Group Journal Week 15 (executive summary)
