Difference between revisions of "Cwong34 Week 11"

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=Bibliography=
 
=Bibliography=
 +
 +
'''Electronic Notebook''': I found two articles after my searches of the three databases and collected the following information from them.
 +
 +
#Homma T., Iwahashi H., & Komatsu Y. (2003). Yeast gene expression during growth at low temperature. ''Cryobiology, 46(3)'', 230-237. https://doi.org/10.1016/S0011-2240(03)00028-2
 +
#*PubMed Abstract: https://www.ncbi.nlm.nih.gov/pubmed/12818212
 +
#*PubMed Central: N/A
 +
#*Publisher Full Text (HTML): http://www.sciencedirect.com/science/article/pii/S0011224003000282?via%3Dihub
 +
#*Publisher Full Text (PDF): https://ac.els-cdn.com/S0011224003000282/1-s2.0-S0011224003000282-main.pdf?_tid=afc6fa22-c8d3-11e7-9942-00000aab0f6b&acdnat=1510619897_687ef7d0c348addf94dc2284e3b4fd39
 +
#*Copyright: 2003 by Elsevier Science; article is not Open Access, but access is immediate with the "Gold Open Access" option for Elsevier and almost immediate with the "Green Open Accesss" option.
 +
#*Publisher: Elsevier (commercial)
 +
#*Availaiblity: online
 +
#*Did LMU pay a fee for this article? yes
 +
#*Are there data available for this article? Not found
 +
#Becerra M., Lombardía L.J., González-Siso M.I., Rodríguez-Belmonte E., Hauser N.C., & Cerdán M.E. (2003). Genome-wide analysis of the yeast transcriptome upon heat and cold shock. ''Comparative and Functional Genomics, 4(4)'', 366-375. doi: 10.1002/cfg.301
 +
#*PubMed Abstract: https://www.ncbi.nlm.nih.gov/pubmed/18629074
 +
#*PubMed Central: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2447359/
 +
#*Publisher Full Text (HTML): http://onlinelibrary.wiley.com/doi/10.1002/cfg.301/full
 +
#*Publisher Full Text (PDF): http://onlinelibrary.wiley.com/doi/10.1002/cfg.301/epdf
 +
#*Copyright: 2003 by John Wiley & Sons, Ltd. (PubMed recognizes Hindawi Publishing Corporation as the publisher, but the PDF credits John Wiley & Son); article is open access
 +
#*Publisher: John Wiley & Sons, Ltd. (very large professional publisher)
 +
#*Availaiblity: online
 +
#*Did LMU pay a fee for this article? no
 +
#*Are there data available for this article? Yes - [[Media:Becerra_M,_et_al_Genome-wide_analysis_of_the_yeast_transcriptome.xls|Supporting Information]]
  
 
=Databases=
 
=Databases=
 +
==Keyword search==
 +
 +
'''Electronic Notebook''': For keyword searches, I entered a few keywords into the search bar of the three databases (PubMed, Google Scholar, and Web of Science). I recorded the number of results, and then I narrowed the search with more terms and recorded the refined number of results.
 +
 +
*PubMed
 +
**Keywords: "yeast cold shock"
 +
**Number of results: 211
 +
**Narrowing results
 +
***Terms: "yeast cold shock microarray"
 +
***Number of results: 6
 +
*Google Scholar
 +
**Keywords: "yeast cold shock"
 +
**Number of results: 289,000
 +
**Narrowing results
 +
***Terms: "yeast cold shock microarray"
 +
***Number of results: 31,600
 +
*Web of Science
 +
**Keywords: "yeast cold shock"
 +
**Number of results: 218
 +
**Narrowing results
 +
***Terms: "yeast cold shock microarray"
 +
***Number of results: 10
 +
 +
==Advanced search==
 +
 +
'''Electronic Notebook''': I used the advanced search tools in the three databases to refine the searches more, and then I recorded the number of results.
 +
 +
*PubMed
 +
**Most useful function: Requiring the keywords to be in the title/abstract
 +
**Number of results: 80
 +
*Google Scholar
 +
**Most useful function: Requiring "cold shock" and either "yeast" or "Saccharomyces cerevisiae" in the title, and adjusting the time to more current articles (1990-2017).
 +
**Number of results: 38
 +
*Web of Science
 +
**Most useful function: Specifying that cold shock and yeast or Saccharomyces cerevisiae needs to be in the title
 +
**Number of results: 8
 +
 +
==Prospective searches==
 +
 +
'''Electronic Notebook''': I searched these three articles in Web of Science, and then recorded the number of articles that cited it and the number of articles that it cited.
 +
 +
*Aguilera, J., Randez-Gil, F., & Prieto, J.A. (2007). Cold Response in Saccharomyces cerevisiae: New Functions for Old Mechanisms. FEMS Microbiological Reviews, 31, 327–341. doi: 10.1111/j.1574-6976.2007.00066.x
 +
**Number of articles cited: 144
 +
**Number of articles that cited this article: 77
 +
*Al-Fageeh, M.B. & Smales, C.M. (2006). Control and Regulation of the Cellular Responses to Cold Shock: the Responses in Yeast and Mammalian Systems. Biochemical Journal, 397, 247–259. doi: 10.1042/BJ20060166
 +
**Number of articles cited: 125
 +
**Number of articles that cited this article: 108
 +
*Thieringer, H.A., Jones, P.G.,& Inouye, M. (1998). Cold shock and adaptation. BioEssays, 20, 49–57. doi: 10.1002/(SICI)1521-1878(199801)20:1<49::AID-BIES8>3.0.CO;2-N10.1042/BJ20060166
 +
**Number of articles cited: 76
 +
**Number of articles that cited this article: 258
  
 
=Acknowledgments=
 
=Acknowledgments=
−
 
+
#I worked with Dina Bashoura during class, and communicated with her outside of class of class through text.
 +
While I worked with the people noted above, this individual journal entry was completed by me and not copied from another source. [[User:Cwong34|Cwong34]] ([[User talk:Cwong34|talk]]) 14:36, 12 November 2017 (PST)
 
=References=
 
=References=
 +
#LMU BioDB 2017. (2017). Week 11. Retrieved November 7, 2017, from https://xmlpipedb.cs.lmu.edu/biodb/fall2017/index.php/Week_11
  
 
{{cwong34}}
 
{{cwong34}}

Latest revision as of 03:56, 14 November 2017

Bibliography

Electronic Notebook: I found two articles after my searches of the three databases and collected the following information from them.

  1. Homma T., Iwahashi H., & Komatsu Y. (2003). Yeast gene expression during growth at low temperature. Cryobiology, 46(3), 230-237. https://doi.org/10.1016/S0011-2240(03)00028-2
  2. Becerra M., Lombardía L.J., González-Siso M.I., Rodríguez-Belmonte E., Hauser N.C., & Cerdán M.E. (2003). Genome-wide analysis of the yeast transcriptome upon heat and cold shock. Comparative and Functional Genomics, 4(4), 366-375. doi: 10.1002/cfg.301

Databases

Keyword search

Electronic Notebook: For keyword searches, I entered a few keywords into the search bar of the three databases (PubMed, Google Scholar, and Web of Science). I recorded the number of results, and then I narrowed the search with more terms and recorded the refined number of results.

  • PubMed
    • Keywords: "yeast cold shock"
    • Number of results: 211
    • Narrowing results
      • Terms: "yeast cold shock microarray"
      • Number of results: 6
  • Google Scholar
    • Keywords: "yeast cold shock"
    • Number of results: 289,000
    • Narrowing results
      • Terms: "yeast cold shock microarray"
      • Number of results: 31,600
  • Web of Science
    • Keywords: "yeast cold shock"
    • Number of results: 218
    • Narrowing results
      • Terms: "yeast cold shock microarray"
      • Number of results: 10

Advanced search

Electronic Notebook: I used the advanced search tools in the three databases to refine the searches more, and then I recorded the number of results.

  • PubMed
    • Most useful function: Requiring the keywords to be in the title/abstract
    • Number of results: 80
  • Google Scholar
    • Most useful function: Requiring "cold shock" and either "yeast" or "Saccharomyces cerevisiae" in the title, and adjusting the time to more current articles (1990-2017).
    • Number of results: 38
  • Web of Science
    • Most useful function: Specifying that cold shock and yeast or Saccharomyces cerevisiae needs to be in the title
    • Number of results: 8

Prospective searches

Electronic Notebook: I searched these three articles in Web of Science, and then recorded the number of articles that cited it and the number of articles that it cited.

  • Aguilera, J., Randez-Gil, F., & Prieto, J.A. (2007). Cold Response in Saccharomyces cerevisiae: New Functions for Old Mechanisms. FEMS Microbiological Reviews, 31, 327–341. doi: 10.1111/j.1574-6976.2007.00066.x
    • Number of articles cited: 144
    • Number of articles that cited this article: 77
  • Al-Fageeh, M.B. & Smales, C.M. (2006). Control and Regulation of the Cellular Responses to Cold Shock: the Responses in Yeast and Mammalian Systems. Biochemical Journal, 397, 247–259. doi: 10.1042/BJ20060166
    • Number of articles cited: 125
    • Number of articles that cited this article: 108
  • Thieringer, H.A., Jones, P.G.,& Inouye, M. (1998). Cold shock and adaptation. BioEssays, 20, 49–57. doi: 10.1002/(SICI)1521-1878(199801)20:1<49::AID-BIES8>3.0.CO;2-N10.1042/BJ20060166
    • Number of articles cited: 76
    • Number of articles that cited this article: 258

Acknowledgments

  1. I worked with Dina Bashoura during class, and communicated with her outside of class of class through text.

While I worked with the people noted above, this individual journal entry was completed by me and not copied from another source. Cwong34 (talk) 14:36, 12 November 2017 (PST)

References

  1. LMU BioDB 2017. (2017). Week 11. Retrieved November 7, 2017, from https://xmlpipedb.cs.lmu.edu/biodb/fall2017/index.php/Week_11

cwong34

BIOL/CMSI 367-01: Biological Databases Fall 2017

Assignments

Journal Entries:

Shared Journals:

Group Project

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