Difference between revisions of "Lights, Camera, InterACTION! Deliverables"
From LMU BioDB 2017
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===Group Report and Presentation=== | ===Group Report and Presentation=== | ||
| + | Group Report: [[Media:LCI_Group_Report.pdf]] | ||
| + | |||
| + | Presentation: [[Media:LCI Presentation.pdf]] | ||
===Individual Statements=== | ===Individual Statements=== | ||
| + | [[Emma's Individual Statement]] | ||
| + | |||
| + | Blair's Individual Statement: '''emailed''' | ||
| + | Katie's Individual Statement: '''emailed''' | ||
===Code and README=== | ===Code and README=== | ||
| + | [https://github.com/bhamilton18/GRNsight GRNsight GitHub Fork] | ||
| − | + | [https://github.com/bhamilton18/GRNsight/blob/master/web-client/public/gene/integrationREADME.md README.md File] | |
| − | === | + | ===ANOVA and stem results, gene list and GO list files=== |
| + | # Excel workbook: [[Media:Wt_Microarraydata_ET.zip]] | ||
| + | # File used to run stem, gene list tables, GO list tables: [[Media:Week10_filesforstem_wildtype_emmat.zip]] | ||
| + | # Powerpoint presentation with stem images (also linked below under GRNmap workbooks): [[Media:Wt_profileimage_presentation_emmat.pptx]] | ||
===YEASTRACT results=== | ===YEASTRACT results=== | ||
| + | # YEASTRACT rank by TF results: [[Media:Yeastract_profile45results_preserved_emmat.xlsx]] | ||
===GRNmap input and output workbooks=== | ===GRNmap input and output workbooks=== | ||
| + | # Final regulation matrix: [[Media:Final_regulationmatrix_trimmed.xlsx]] | ||
| + | # Input workbook: [[Media:17-genes_39-edges_teamINT_Sigmoid_estimation.xlsx]] | ||
| + | # Output workbook after Matlab: [[Media:Matlab_output_17-genes_39-edges_teamINT_Sigmoid_estimation_output_copy.xlsx]] | ||
| + | # Weighted and unweighted GRNmap images: [[Media:GRNmap_images_emma_t.zip]] | ||
| + | # Individual gene .jpg's from matlab output: [[Media:Emmat_gene_jpg_matlab.zip]] | ||
===Electronic notebook corresponding to microarray results=== | ===Electronic notebook corresponding to microarray results=== | ||
| − | + | # [[Emmatyrnauer Week 8]] | |
| − | {{ | + | # [[Emmatyrnauer Week 10]] |
| + | # [[Emmatyrnauer Week 11]] | ||
| + | # [[Emmatyrnauer Week 12]] | ||
| + | # [[Emmatyrnauer Week 14]] | ||
| + | # [[Emmatyrnauer Week 15]] | ||
| + | {{template:Pugs Not Drugs}} | ||
Latest revision as of 00:26, 16 December 2017
Contents
Group Report and Presentation
Group Report: Media:LCI_Group_Report.pdf
Presentation: Media:LCI Presentation.pdf
Individual Statements
Blair's Individual Statement: emailed Katie's Individual Statement: emailed
Code and README
ANOVA and stem results, gene list and GO list files
- Excel workbook: Media:Wt_Microarraydata_ET.zip
- File used to run stem, gene list tables, GO list tables: Media:Week10_filesforstem_wildtype_emmat.zip
- Powerpoint presentation with stem images (also linked below under GRNmap workbooks): Media:Wt_profileimage_presentation_emmat.pptx
YEASTRACT results
- YEASTRACT rank by TF results: Media:Yeastract_profile45results_preserved_emmat.xlsx
GRNmap input and output workbooks
- Final regulation matrix: Media:Final_regulationmatrix_trimmed.xlsx
- Input workbook: Media:17-genes_39-edges_teamINT_Sigmoid_estimation.xlsx
- Output workbook after Matlab: Media:Matlab_output_17-genes_39-edges_teamINT_Sigmoid_estimation_output_copy.xlsx
- Weighted and unweighted GRNmap images: Media:GRNmap_images_emma_t.zip
- Individual gene .jpg's from matlab output: Media:Emmat_gene_jpg_matlab.zip
Electronic notebook corresponding to microarray results
- Emmatyrnauer Week 8
- Emmatyrnauer Week 10
- Emmatyrnauer Week 11
- Emmatyrnauer Week 12
- Emmatyrnauer Week 14
- Emmatyrnauer Week 15
| Category | Links |
|---|---|
| Interwiki | Main Page Course schedule Lights, Camera, InterACTION! LCI! Deliverables |
| Team Members | Blair Hamilton Emma Tyrnauer Katie Wright Zach Van Ysseldyk |
| GRNsight Gene Page Project Instructions |
Main Instructions Project Deliverables Week 11 Week 12 Week 14 Week 15 |
| Guilds | Project Manager Quality Assurance Data Analysis Coder |
| GitHub GRNsight Link | https://github.com/bhamilton18/GRNsight |
