Difference between revisions of "JASPAR the Friendly Ghost Final Deliverables"
From LMU BioDB 2017
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==Group Report== | ==Group Report== | ||
| + | [[Media:JASPAR Final Paper.pdf|JASPAR the Friendly Ghost Group Report]] | ||
| + | |||
==Individual statements of work, assessments, reflections== | ==Individual statements of work, assessments, reflections== | ||
| − | [[QLanners_individual_statement|Quinn Lanners]] | [[ | + | [[QLanners_individual_statement|Quinn Lanners]] | [[Aporras1_Individual_Assessment_and_Reflection|Antonio Porras]] | [[Ebachour_Week_15|Edward Bachoura]] | [[simonwro120 individual statement|Simon Wroblewski]] |
| + | |||
==Group PowerPoint presentation== | ==Group PowerPoint presentation== | ||
[[Media:JASPAR The Friendly Ghost Group Presentation.pdf | Final Group Presentation (pdf)]] | December 11, 2017 | [[Media:JASPAR The Friendly Ghost Group Presentation.pdf | Final Group Presentation (pdf)]] | December 11, 2017 | ||
==Code== | ==Code== | ||
| + | [[Media:Api.txt|JASPAR team's code (as well as hAPI's code)]] | December 15, 2017<br> | ||
==README that summarizes the functionality of your team's new feature== | ==README that summarizes the functionality of your team's new feature== | ||
| + | [[Media:README.txt|Readme.txt]] | December 15, 2017<br> | ||
==Excel spreadsheet with ANOVA results/stem formatting== | ==Excel spreadsheet with ANOVA results/stem formatting== | ||
[[Media:AP dZAP1 stem.xlsx]] | [[Media:AP dZAP1 stem.xlsx]] | ||
| Line 19: | Line 24: | ||
[[Media:15-gene 44-edge teamJASPAR Sigmoid estimation output.xlsx]] | [[Media:15-gene 44-edge teamJASPAR Sigmoid estimation output.xlsx]] | ||
*Expression vs. Time Images generated from MATLAB: [[Media:Output Images from 15-gene 44-edge teamJASPAR Sigmoid estimation.zip]] | *Expression vs. Time Images generated from MATLAB: [[Media:Output Images from 15-gene 44-edge teamJASPAR Sigmoid estimation.zip]] | ||
| − | ==Electronic | + | ==Electronic notebooks corresponding to the microarray results files== |
| + | #[[Aporras1 Week 8]] | ||
| + | #[[Aporras1 Week 10]] | ||
| + | #[[Aporras1 Week 14]] | ||
| + | #[[Aporras1 Week 15]] | ||
==Team Links== | ==Team Links== | ||
{{Template:JASPAR the Friendly Ghost Links}} | {{Template:JASPAR the Friendly Ghost Links}} | ||
| + | ==Team Signatures== | ||
| + | *[[User:Simonwro120|Simonwro120]] ([[User talk:Simonwro120|talk]]) 20:49, 13 December 2017 (PST) <br> | ||
| + | *[[User:Qlanners|Qlanners]] ([[User talk:Qlanners|talk]]) 15:48, 15 December 2017 (PST) | ||
| + | *[[User:Aporras1|Aporras1]] ([[User talk:Aporras1|talk]]) 15:55, 15 December 2017 (PST) | ||
| + | *[[User:Ebachour|Ebachour]] ([[User talk:Ebachour|talk]]) 15:57, 15 December 2017 (PST) | ||
==Class Links== | ==Class Links== | ||
{{Template:GRNsight Gene Page Project Links}} | {{Template:GRNsight Gene Page Project Links}} | ||
Latest revision as of 00:07, 16 December 2017
Contents
- 1 Group Report
- 2 Individual statements of work, assessments, reflections
- 3 Group PowerPoint presentation
- 4 Code
- 5 README that summarizes the functionality of your team's new feature
- 6 Excel spreadsheet with ANOVA results/stem formatting
- 7 PowerPoint of screenshots of stem results
- 8 Gene List and GO List files from each significant profile
- 9 YEASTRACT "rank by TF" results
- 10 GRNmap input workbook
- 11 GRNmap output workbook
- 12 Electronic notebooks corresponding to the microarray results files
- 13 Team Links
- 14 Team Signatures
- 15 Class Links
Group Report
JASPAR the Friendly Ghost Group Report
Individual statements of work, assessments, reflections
Quinn Lanners | Antonio Porras | Edward Bachoura | Simon Wroblewski
Group PowerPoint presentation
Final Group Presentation (pdf) | December 11, 2017
Code
JASPAR team's code (as well as hAPI's code) | December 15, 2017
README that summarizes the functionality of your team's new feature
Readme.txt | December 15, 2017
Excel spreadsheet with ANOVA results/stem formatting
PowerPoint of screenshots of stem results
Media:AP dZAP1 STEM Screenshots & p-values.zip
Gene List and GO List files from each significant profile
Media:AP dZAP1 GOlist and genelist for profiles.zip
YEASTRACT "rank by TF" results
Media:AP YEASTRACT Transcription Factors.xlsx
GRNmap input workbook
Media:15-gene_44-edge_teamJASPAR_Sigmoid_estimation.xlsx
GRNmap output workbook
Media:15-gene 44-edge teamJASPAR Sigmoid estimation output.xlsx
- Expression vs. Time Images generated from MATLAB: Media:Output Images from 15-gene 44-edge teamJASPAR Sigmoid estimation.zip
Electronic notebooks corresponding to the microarray results files
Team Links
Course Home Page
JASPAR the Friendly Ghost Team Page
JASPAR the Friendly Ghost Final GRNsight Deliverables Page
JASPAR Database
Team Member's Pages: Quinn Lanners Project Manager/QA | Antonio Porras Data Analyst | Eddie Bachoura Coder | Simon Wroblewski Coder
Instructors: Dr. Dondi | Dr. Dahlquist
Individual Journal Pages:
- Week 11: Quinn Lanners | Antonio Porras | Edward Bachoura | Simon Wroblewski
- Week 12: Quinn Lanners | Antonio Porras | Edward Bachoura | Simon Wroblewski
- Week 13: Thanksgiving Break
- Week 14: Quinn Lanners | Antonio Porras | Edward Bachoura | Simon Wroblewski
- Week 15: Quinn Lanners | Antonio Porras | Edward Bachoura | Simon Wroblewski
Team Signatures
- Simonwro120 (talk) 20:49, 13 December 2017 (PST)
- Qlanners (talk) 15:48, 15 December 2017 (PST)
- Aporras1 (talk) 15:55, 15 December 2017 (PST)
- Ebachour (talk) 15:57, 15 December 2017 (PST)
Class Links
| GRNsight Gene Page Project Links | |||||||
|---|---|---|---|---|---|---|---|
| Overview | Deliverables | Reference Format | Guilds | Project Manager | Quality Assurance | Data Analysis | Coder |
| Teams | Page Desiigner | Lights, Camera, InterACTION! | Gene hAPI | JASPAR the Friendly Ghost | |||
