Difference between revisions of "Aporras1 Week 2"

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created by: [[User:Aporras1|Antonio Porras]]
 
created by: [[User:Aporras1|Antonio Porras]]
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==Electronic Notebook Link==
  
 
[[Aporras1 Electronic Notebook|Electronic Notebook]]
 
[[Aporras1 Electronic Notebook|Electronic Notebook]]
 +
 
==The Genetic Code==
 
==The Genetic Code==
 +
 +
'''Template (top strand) and Complimentary (bottom strand) strands of DNA'''
 +
 +
5'-cgtatgctaataccatgttccgcgtataacccagccgccagttccgctggcggcatttta-3'
 +
3'-gcatacgattatggtacaaggcgcatattgggtcggcggtcaaggcgaccgccgtaaaat-5'
 +
 +
'''Negative RNA Strand'''
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3'-gcauacgauuaugguacaaggcgcauauugggucggcggucaaggcgaccgccguaaaau-5'
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 +
'''Positive RNA Strand'''
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5'-cguaugcuaauaccauguuccgcguauaacccagccgccaguuccgcuggcggcauuuua-3' RNA Strand (Bottom Strand)
 +
 +
'''Reading frames (+1), (-2), and (-3) are considered open reading frames because they do not have a STOP codon.'''
  
 
'''(+1) Frame'''  
 
'''(+1) Frame'''  
−
  5'-cgu aug cua aua cca ugu ucc gcg uau aac cca gcc gcc agu ucc gcu ggc ggc auu uua-3'
+
  5'-R-M-L-I-P-C-S-A-Y-N-P-A-A-S-S-A-G-G-I-L-3'
−
R-M-L-I-P-C-S-A-Y-N-P-A-A-S-S-A-G-G-I-L
 
  
 
'''(+2) Frame'''
 
'''(+2) Frame'''
−
  (+2) 5'-c gua ugc uaa uac cau guu ccg cgu aua acc cag ccg cca guu ccg cug gcg gca uuu ua-3'
+
  5'-c-V-C-STOP-Y-H-V-O-R-I-T-Q-P-P-V-P-L-A-A-F-ua-3'
−
c-V-C-STOP-Y-H-V-O-R-I-T-Q-P-P-V-P-L-A-A-F-ua
 
  
 
'''(+3) Frame'''
 
'''(+3) Frame'''
−
  (+3) 5'-cg uau gcu aau acc aug uuc cgc gua uaa ccc agc cgc cag uuc cgc ugg cgg cau uuu a-3'
+
  5'-cg-Y-A-N-T-M-F-R-V-STOP-P-S-R-Q-F-R-W-R-H-F-a-3'
−
cg-Y-A-N-T-M-F-R-V-STOP-P-S-R-Q-F-R-W-R-H-F-a
 
  
 
'''(-1) Frame'''
 
'''(-1) Frame'''
−
  3'-gca uac gau uau ggu aca agg cgc aua uug ggu cgg cgg uca agg cga ccg ccg uaa aau-5'
+
  3'-A-Y-D-Y-G-T-R-R-I-L-G-R-R-S-R-R-P-P-STOP-N-5'
−
A-Y-D-Y-G-T-R-R-I-L-G-R-R-S-R-R-P-P-STOP-N
 
  
 
'''(-2) Frame'''
 
'''(-2) Frame'''
−
  3'-g cau acg auu aug gua caa ggc gca uau ugg guc ggc ggu caa ggc gac cgc cgu aaa au-5'
+
  3'-g-H-T-I-M-V-Q-G-A-Y-W-V-G-G-Q-G-D-R-R-K-au-5'
−
g-H-T-I-M-V-Q-G-A-Y-W-V-G-G-Q-G-D-R-R-K-au
 
  
 
'''(-3) Frame'''
 
'''(-3) Frame'''
−
  3'-gc aua cga uua ugg uac aag gcg cau auu ggg ucg gcg guc aag gcg acc gcc gua aaa u-5'
+
  3'-gc-I-R-L-W-Y-K-A-H-I-G-S-A-V-K-A-T-A-V-K-u-5'
−
gc-I-R-L-W-Y-K-A-H-I-G-S-A-V-K-A-T-A-V-K-u
+
 
 +
'''Typically with the translation of RNA to amino acid, the translation would stop when the "STOP" sequence is reached.'''
  
 
==Acknowledgements==
 
==Acknowledgements==
 
#Met outside of class with [[User:Bhamilton18|Blair Hamilton]] to discuss any questions we had prior to meeting and throughout the process of completing the [[Week 2|Week 2]] assignment.
 
#Met outside of class with [[User:Bhamilton18|Blair Hamilton]] to discuss any questions we had prior to meeting and throughout the process of completing the [[Week 2|Week 2]] assignment.
−
#Retrieved the Genetic Code used from the [[Week 2|Week 2]] page.
+
'''While I worked with the people noted above, this individual journal entry was completed by me and not copied from another source.'''
 +
 
 +
[[User:Aporras1|Aporras1]] ([[User talk:Aporras1|talk]]) 23:19, 11 September 2017 (PDT)
  
 
==References==
 
==References==
 
#Genetic code. (2017, August 31). Retrieved September 09, 2017, from https://en.wikipedia.org/wiki/Genetic_code#RNA_codon_table
 
#Genetic code. (2017, August 31). Retrieved September 09, 2017, from https://en.wikipedia.org/wiki/Genetic_code#RNA_codon_table
 +
#LMU BioDB 2017. (2017). Week 2. Retrieved September 11, 2017, from https://xmlpipedb.cs.lmu.edu/biodb/fall2017/index.php/Week_2 Genetic code. (2017, August 31).
 
#Open reading frame. (2017, July 30). Retrieved September 09, 2017, from https://en.wikipedia.org/wiki/Open_reading_frame
 
#Open reading frame. (2017, July 30). Retrieved September 09, 2017, from https://en.wikipedia.org/wiki/Open_reading_frame

Latest revision as of 06:27, 12 September 2017

created by: Antonio Porras

Electronic Notebook Link

Electronic Notebook

The Genetic Code

Template (top strand) and Complimentary (bottom strand) strands of DNA 

5'-cgtatgctaataccatgttccgcgtataacccagccgccagttccgctggcggcatttta-3'
3'-gcatacgattatggtacaaggcgcatattgggtcggcggtcaaggcgaccgccgtaaaat-5'

Negative RNA Strand 

3'-gcauacgauuaugguacaaggcgcauauugggucggcggucaaggcgaccgccguaaaau-5'

Positive RNA Strand 

5'-cguaugcuaauaccauguuccgcguauaacccagccgccaguuccgcuggcggcauuuua-3' RNA Strand (Bottom Strand)

Reading frames (+1), (-2), and (-3) are considered open reading frames because they do not have a STOP codon.

(+1) Frame 

5'-R-M-L-I-P-C-S-A-Y-N-P-A-A-S-S-A-G-G-I-L-3'

(+2) Frame 

5'-c-V-C-STOP-Y-H-V-O-R-I-T-Q-P-P-V-P-L-A-A-F-ua-3'

(+3) Frame 

5'-cg-Y-A-N-T-M-F-R-V-STOP-P-S-R-Q-F-R-W-R-H-F-a-3'

(-1) Frame 

3'-A-Y-D-Y-G-T-R-R-I-L-G-R-R-S-R-R-P-P-STOP-N-5'

(-2) Frame 

3'-g-H-T-I-M-V-Q-G-A-Y-W-V-G-G-Q-G-D-R-R-K-au-5'

(-3) Frame 

3'-gc-I-R-L-W-Y-K-A-H-I-G-S-A-V-K-A-T-A-V-K-u-5'

Typically with the translation of RNA to amino acid, the translation would stop when the "STOP" sequence is reached.

Acknowledgements

  1. Met outside of class with Blair Hamilton to discuss any questions we had prior to meeting and throughout the process of completing the Week 2 assignment.

While I worked with the people noted above, this individual journal entry was completed by me and not copied from another source.

Aporras1 (talk) 23:19, 11 September 2017 (PDT)

References

  1. Genetic code. (2017, August 31). Retrieved September 09, 2017, from https://en.wikipedia.org/wiki/Genetic_code#RNA_codon_table
  2. LMU BioDB 2017. (2017). Week 2. Retrieved September 11, 2017, from https://xmlpipedb.cs.lmu.edu/biodb/fall2017/index.php/Week_2 Genetic code. (2017, August 31).
  3. Open reading frame. (2017, July 30). Retrieved September 09, 2017, from https://en.wikipedia.org/wiki/Open_reading_frame
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