Difference between revisions of "Emmatyrnauer Week 9"

From LMU BioDB 2017
Jump to: navigation, search
(outline for assignment)
 
(→‎Electronic Notebook: adding grnsight testing results)
Line 1: Line 1:
 
==Electronic Notebook==
 
==Electronic Notebook==
 +
===Hands on with GRNsight===
 +
I tested the gray threshold and zoom functions on GRNsight beta version.
 +
'''Test 1'''
 +
*Instructions: Load Graph - File Menu -> Open
 +
*Results: GRNsight should lay out a network graph from the Excel workbook if there are no errors in
 +
the file
 +
*Passes
 +
 +
'''Test 2'''
 +
*Instructions: Load Graph - File Menu -> Import SIF
 +
*Results: GRNsight should lay out a network graph from the SIF file if there are no errors in the file
 +
*Passed
 +
 +
'''Test 3'''
 +
*Instructions: Load Graph - File Menu -> Import GraphML
 +
*Results: GRNsight should lay out a network graph from the GraphML file if there are no errors in
 +
the file
 +
*Passed
 +
 +
'''Test 4'''
 +
*Instructions: Load Graph - File Menu -> Open. Gray Threshold Slider - Change the Grey Threshold Value
 +
*Results: GRNsight should lay out a network graph from the Excel workbook if there are no errors in
 +
the file. The graph should reload, with edges that fall below the threshold value colored gray
 +
*Did not pass; the zoom function was not visible
 +
 +
'''Test 5'''
 +
*Instructions: Load Graph - File Menu -> Import SIF. Gray Threshold Slider - Change the Grey Threshold Value
 +
*Results: GRNsight should lay out a network graph from the SIF file if there are no errors in the file. The graph should reload, with edges that fall below the threshold value colored gray
 +
*Passed
 +
 +
'''Test 6'''
 +
*Instructions: Load Graph - File Menu -> Import GraphML. Gray Threshold Slider - Change the Grey Threshold Value
 +
*Results: GRNsight should lay out a network graph from the GraphML file if there are no errors in
 +
the file. The graph should reload, with edges that fall below the threshold value colored gray
 +
*Did not pass; the zoom function was not visible
 +
 +
'''Test 7'''
 +
*Instructions: Load Graph - File Menu -> Open. Zoom Slider - Increase Zoom Level
 +
*Results: GRNsight should lay out a network graph from the Excel workbook if there are no errors in
 +
the file. The graph should zoom in (get larger)
 +
*Passed
 +
 +
'''Test 8'''
 +
Instructions:
 +
Load Graph - File Menu -> Import SIF
 +
Zoom Slider - Increase Zoom Level
 +
Results:
 +
GRNsight should lay out a network graph from the SIF file if there are no errors in the file
 +
The graph should zoom in (get larger)
 +
 +
'''Test 9'''
 +
Instructions:
 +
Load Graph - File Menu -> Import GraphML
 +
Zoom Slider - Increase Zoom Level
 +
Results:
 +
GRNsight should lay out a network graph from the GraphML file if there are no errors in
 +
the file
 +
The graph should zoom in (get larger)
 +
 +
'''Test 10'''
 +
Instructions:
 +
Load Graph - File Menu -> Open
 +
Gray Threshold Slider - Change the Grey Threshold Value
 +
Zoom Slider - Increase Zoom Level
 +
Results:
 +
GRNsight should lay out a network graph from the Excel workbook if there are no errors in
 +
the file
 +
The graph should reload, with edges that fall below the threshold value colored gray
 +
The graph should zoom in (get larger)
 +
 +
'''Test 11'''
 +
Instructions:
 +
Load Graph - File Menu -> Import SIF
 +
Gray Threshold Slider - Change the Grey Threshold Value
 +
Zoom Slider - Increase Zoom Level
 +
Results:
 +
GRNsight should lay out a network graph from the SIF file if there are no errors in the file
 +
The graph should reload, with edges that fall below the threshold value colored gray
 +
The graph should zoom in (get larger)
 +
 +
'''Test 12'''
 +
Instructions:
 +
Load Graph - File Menu -> Import GraphML
 +
Gray Threshold Slider - Change the Grey Threshold Value
 +
Zoom Slider - Increase Zoom Level
 +
Results:
 +
GRNsight should lay out a network graph from the GraphML file if there are no errors in
 +
the file
 +
The graph should reload, with edges that fall below the threshold value colored gray
 +
The graph should zoom in (get larger)
 +
 +
'''Test 13'''
 +
Instructions:
 +
Load Graph - File Menu -> Open
 +
Zoom Slider - Decrease Zoom Level
 +
Results:
 +
GRNsight should lay out a network graph from the Excel workbook if there are no errors in
 +
the file
 +
The graph should zoom out (get smaller)
 +
 +
'''Test 14'''
 +
Instructions:
 +
Load Graph - File Menu -> Import SIF
 +
Zoom Slider - Decrease Zoom Level
 +
Results:
 +
GRNsight should lay out a network graph from the SIF file if there are no errors in the file
 +
The graph should zoom out (get smaller)
 +
 +
'''Test 15'''
 +
Instructions:
 +
Load Graph - File Menu -> Import GraphML
 +
Zoom Slider - Decrease Zoom Level
 +
Results:
 +
GRNsight should lay out a network graph from the GraphML file if there are no errors in
 +
the file
 +
The graph should zoom out (get smaller)
 +
 +
'''Test 16'''
 +
Instructions:
 +
Load Graph - File Menu -> Open
 +
Gray Threshold Slider - Change the Grey Threshold Value
 +
Zoom Slider - Decrease Zoom Level
 +
Results:
 +
GRNsight should lay out a network graph from the Excel workbook if there are no errors in
 +
the file
 +
The graph should reload, with edges that fall below the threshold value colored gray
 +
The graph should zoom out (get smaller)
 +
 +
'''Test 17'''
 +
Instructions:
 +
Load Graph - File Menu -> Import SIF
 +
Gray Threshold Slider - Change the Grey Threshold Value
 +
Zoom Slider - Decrease Zoom Level
 +
Results:
 +
GRNsight should lay out a network graph from the SIF file if there are no errors in the file
 +
The graph should reload, with edges that fall below the threshold value colored gray
 +
The graph should zoom out (get smaller)
 +
 +
'''Test 18'''
 +
Instructions:
 +
Load Graph - File Menu -> Import GraphML
 +
Gray Threshold Slider - Change the Grey Threshold Value
 +
Zoom Slider - Decrease Zoom Level
 +
Results:
 +
GRNsight should lay out a network graph from the GraphML file if there are no errors in
 +
the file
 +
The graph should reload, with edges that fall below the threshold value colored gray
 +
The graph should zoom out (get smaller)
 +
 
==Acknowledgements==
 
==Acknowledgements==
 
==References==
 
==References==
 
{{Emmatyrnauer}}
 
{{Emmatyrnauer}}

Revision as of 18:20, 30 October 2017

Electronic Notebook

Hands on with GRNsight

I tested the gray threshold and zoom functions on GRNsight beta version. Test 1

  • Instructions: Load Graph - File Menu -> Open
  • Results: GRNsight should lay out a network graph from the Excel workbook if there are no errors in

the file

  • Passes

Test 2

  • Instructions: Load Graph - File Menu -> Import SIF
  • Results: GRNsight should lay out a network graph from the SIF file if there are no errors in the file
  • Passed

Test 3

  • Instructions: Load Graph - File Menu -> Import GraphML
  • Results: GRNsight should lay out a network graph from the GraphML file if there are no errors in

the file

  • Passed

Test 4

  • Instructions: Load Graph - File Menu -> Open. Gray Threshold Slider - Change the Grey Threshold Value
  • Results: GRNsight should lay out a network graph from the Excel workbook if there are no errors in

the file. The graph should reload, with edges that fall below the threshold value colored gray

  • Did not pass; the zoom function was not visible

Test 5

  • Instructions: Load Graph - File Menu -> Import SIF. Gray Threshold Slider - Change the Grey Threshold Value
  • Results: GRNsight should lay out a network graph from the SIF file if there are no errors in the file. The graph should reload, with edges that fall below the threshold value colored gray
  • Passed

Test 6

  • Instructions: Load Graph - File Menu -> Import GraphML. Gray Threshold Slider - Change the Grey Threshold Value
  • Results: GRNsight should lay out a network graph from the GraphML file if there are no errors in

the file. The graph should reload, with edges that fall below the threshold value colored gray

  • Did not pass; the zoom function was not visible

Test 7

  • Instructions: Load Graph - File Menu -> Open. Zoom Slider - Increase Zoom Level
  • Results: GRNsight should lay out a network graph from the Excel workbook if there are no errors in

the file. The graph should zoom in (get larger)

  • Passed

Test 8 Instructions: Load Graph - File Menu -> Import SIF Zoom Slider - Increase Zoom Level Results: GRNsight should lay out a network graph from the SIF file if there are no errors in the file The graph should zoom in (get larger)

Test 9 Instructions: Load Graph - File Menu -> Import GraphML Zoom Slider - Increase Zoom Level Results: GRNsight should lay out a network graph from the GraphML file if there are no errors in the file The graph should zoom in (get larger)

Test 10 Instructions: Load Graph - File Menu -> Open Gray Threshold Slider - Change the Grey Threshold Value Zoom Slider - Increase Zoom Level Results: GRNsight should lay out a network graph from the Excel workbook if there are no errors in the file The graph should reload, with edges that fall below the threshold value colored gray The graph should zoom in (get larger)

Test 11 Instructions: Load Graph - File Menu -> Import SIF Gray Threshold Slider - Change the Grey Threshold Value Zoom Slider - Increase Zoom Level Results: GRNsight should lay out a network graph from the SIF file if there are no errors in the file The graph should reload, with edges that fall below the threshold value colored gray The graph should zoom in (get larger)

Test 12 Instructions: Load Graph - File Menu -> Import GraphML Gray Threshold Slider - Change the Grey Threshold Value Zoom Slider - Increase Zoom Level Results: GRNsight should lay out a network graph from the GraphML file if there are no errors in the file The graph should reload, with edges that fall below the threshold value colored gray The graph should zoom in (get larger)

Test 13 Instructions: Load Graph - File Menu -> Open Zoom Slider - Decrease Zoom Level Results: GRNsight should lay out a network graph from the Excel workbook if there are no errors in the file The graph should zoom out (get smaller)

Test 14 Instructions: Load Graph - File Menu -> Import SIF Zoom Slider - Decrease Zoom Level Results: GRNsight should lay out a network graph from the SIF file if there are no errors in the file The graph should zoom out (get smaller)

Test 15 Instructions: Load Graph - File Menu -> Import GraphML Zoom Slider - Decrease Zoom Level Results: GRNsight should lay out a network graph from the GraphML file if there are no errors in the file The graph should zoom out (get smaller)

Test 16 Instructions: Load Graph - File Menu -> Open Gray Threshold Slider - Change the Grey Threshold Value Zoom Slider - Decrease Zoom Level Results: GRNsight should lay out a network graph from the Excel workbook if there are no errors in the file The graph should reload, with edges that fall below the threshold value colored gray The graph should zoom out (get smaller)

Test 17 Instructions: Load Graph - File Menu -> Import SIF Gray Threshold Slider - Change the Grey Threshold Value Zoom Slider - Decrease Zoom Level Results: GRNsight should lay out a network graph from the SIF file if there are no errors in the file The graph should reload, with edges that fall below the threshold value colored gray The graph should zoom out (get smaller)

Test 18 Instructions: Load Graph - File Menu -> Import GraphML Gray Threshold Slider - Change the Grey Threshold Value Zoom Slider - Decrease Zoom Level Results: GRNsight should lay out a network graph from the GraphML file if there are no errors in the file The graph should reload, with edges that fall below the threshold value colored gray The graph should zoom out (get smaller)

Acknowledgements

References

Links

  1. My User Page
  2. List of Assignments
  3. List of Journal Entries
  4. List of Shared Journal Entries
Retrieved from "https://xmlpipedb.lmucs.io/biodb/fall2017/index.php?title=Emmatyrnauer_Week_9&oldid=3529"