Difference between revisions of "ArashLari Week 9"
From LMU BioDB 2017
(All test instructions) |
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== Test 3 == | == Test 3 == | ||
Instructions: | Instructions: | ||
| − | Load Graph - File Menu -> Import GraphML | + | *Load Graph - File Menu -> Import GraphML |
| − | Restrict Graph to Viewport - Check | + | *Restrict Graph to Viewport - Check |
| − | Hide/Show Edge Weights - Select "Show With Mouse Over" | + | *Hide/Show Edge Weights - Select "Show With Mouse Over" |
== Test 4 == | == Test 4 == | ||
Instructions: | Instructions: | ||
| − | Load Graph - File Menu -> Open | + | *Load Graph - File Menu -> Open |
| − | Restrict Graph to Viewport - Uncheck | + | *Restrict Graph to Viewport - Uncheck |
| − | Hide/Show Edge Weights - Select "Show With Mouse Over" | + | *Hide/Show Edge Weights - Select "Show With Mouse Over" |
== Test 5 == | == Test 5 == | ||
Instructions: | Instructions: | ||
| − | Load Graph - File Menu -> Import SIF | + | *Load Graph - File Menu -> Import SIF |
| − | Restrict Graph to Viewport - Uncheck | + | *Restrict Graph to Viewport - Uncheck |
| − | Hide/Show Edge Weights - Select "Show With Mouse Over" | + | *Hide/Show Edge Weights - Select "Show With Mouse Over" |
== Test 6 == | == Test 6 == | ||
Instructions: | Instructions: | ||
| − | Load Graph - File Menu -> Import GraphML | + | *Load Graph - File Menu -> Import GraphML |
| − | Restrict Graph to Viewport - Uncheck | + | *Restrict Graph to Viewport - Uncheck |
| − | Hide/Show Edge Weights - Select "Show With Mouse Over" | + | *Hide/Show Edge Weights - Select "Show With Mouse Over" |
== Test 7 == | == Test 7 == | ||
Instructions: | Instructions: | ||
| − | Load Graph - File Menu -> Open | + | *Load Graph - File Menu -> Open |
| − | Restrict Graph to Viewport - Check | + | *Restrict Graph to Viewport - Check |
| − | Hide/Show Edge Weights - Select "Always Show Edge Weights" | + | *Hide/Show Edge Weights - Select "Always Show Edge Weights" |
== Test 8 == | == Test 8 == | ||
Instructions: | Instructions: | ||
| − | Load Graph - File Menu -> Import SIF | + | *Load Graph - File Menu -> Import SIF |
| − | Restrict Graph to Viewport - Check | + | *Restrict Graph to Viewport - Check |
| − | Hide/Show Edge Weights - Select "Always Show Edge Weights" | + | *Hide/Show Edge Weights - Select "Always Show Edge Weights" |
== Test 9 == | == Test 9 == | ||
Instructions: | Instructions: | ||
| − | Load Graph - File Menu -> Import GraphML | + | *Load Graph - File Menu -> Import GraphML |
| − | Restrict Graph to Viewport - Check | + | *Restrict Graph to Viewport - Check |
| − | Hide/Show Edge Weights - Select "Always Show Edge Weights" | + | *Hide/Show Edge Weights - Select "Always Show Edge Weights" |
== Test 10 == | == Test 10 == | ||
Instructions: | Instructions: | ||
| − | Load Graph - File Menu -> Open | + | *Load Graph - File Menu -> Open |
| − | Restrict Graph to Viewport - Uncheck | + | *Restrict Graph to Viewport - Uncheck |
| − | Hide/Show Edge Weights - Select "Always Show Edge Weights" | + | *Hide/Show Edge Weights - Select "Always Show Edge Weights" |
== Test 11 == | == Test 11 == | ||
Instructions: | Instructions: | ||
| − | Load Graph - File Menu -> Import SIF | + | *Load Graph - File Menu -> Import SIF |
| − | Restrict Graph to Viewport - Uncheck | + | *Restrict Graph to Viewport - Uncheck |
| − | Hide/Show Edge Weights - Select "Always Show Edge Weights" | + | *Hide/Show Edge Weights - Select "Always Show Edge Weights" |
== Test 12 == | == Test 12 == | ||
Instructions: | Instructions: | ||
| − | Load Graph - File Menu -> Import GraphML | + | *Load Graph - File Menu -> Import GraphML |
| − | Restrict Graph to Viewport - Uncheck | + | *Restrict Graph to Viewport - Uncheck |
| − | Hide/Show Edge Weights - Select "Always Show Edge Weights" | + | *Hide/Show Edge Weights - Select "Always Show Edge Weights" |
== Test 13 == | == Test 13 == | ||
Instructions: | Instructions: | ||
| − | Load Graph - File Menu -> Open | + | *Load Graph - File Menu -> Open |
| − | Restrict Graph to Viewport - Check | + | *Restrict Graph to Viewport - Check |
| − | Hide/Show Edge Weights - Select "Never Show Edge Weights" | + | *Hide/Show Edge Weights - Select "Never Show Edge Weights" |
== Test 14 == | == Test 14 == | ||
Instructions: | Instructions: | ||
| − | Load Graph - File Menu -> Import SIF | + | *Load Graph - File Menu -> Import SIF |
| − | Restrict Graph to Viewport - Check | + | *Restrict Graph to Viewport - Check |
| − | Hide/Show Edge Weights - Select "Never Show Edge Weights" | + | *Hide/Show Edge Weights - Select "Never Show Edge Weights" |
== Test 15 == | == Test 15 == | ||
Instructions: | Instructions: | ||
| − | Load Graph - File Menu -> Import GraphML | + | *Load Graph - File Menu -> Import GraphML |
| − | Restrict Graph to Viewport - Check | + | *Restrict Graph to Viewport - Check |
| − | Hide/Show Edge Weights - Select "Never Show Edge Weights" | + | *Hide/Show Edge Weights - Select "Never Show Edge Weights" |
== Test 16 == | == Test 16 == | ||
Instructions: | Instructions: | ||
| − | Load Graph - File Menu -> Open | + | *Load Graph - File Menu -> Open |
| − | Restrict Graph to Viewport - Uncheck | + | *Restrict Graph to Viewport - Uncheck |
| − | Hide/Show Edge Weights - Select "Never Show Edge Weights" | + | *Hide/Show Edge Weights - Select "Never Show Edge Weights" |
== Test 17 == | == Test 17 == | ||
Instructions: | Instructions: | ||
| − | Load Graph - File Menu -> Import SIF | + | *Load Graph - File Menu -> Import SIF |
| − | Restrict Graph to Viewport - Uncheck | + | *Restrict Graph to Viewport - Uncheck |
| − | Hide/Show Edge Weights - Select "Never Show Edge Weights" | + | *Hide/Show Edge Weights - Select "Never Show Edge Weights" |
== Test 18 == | == Test 18 == | ||
Instructions: | Instructions: | ||
| − | Load Graph - File Menu -> Import GraphML | + | *Load Graph - File Menu -> Import GraphML |
| − | Restrict Graph to Viewport - Uncheck | + | *Restrict Graph to Viewport - Uncheck |
| − | Hide/Show Edge Weights - Select "Never Show Edge Weights" | + | *Hide/Show Edge Weights - Select "Never Show Edge Weights" |
= Ensemble URL = | = Ensemble URL = | ||
Revision as of 05:55, 31 October 2017
Contents
Electronic Workbook
For the purposes of testing I used the following files:
- 21-genes_31-edges_Schade-data_estimation_output.xlsx
- 21-genes_31-edges_Schade-data_estimation_output.sif
- 21-genes_31-edges_Schade-data_estimation_output.graphml
Then proceed to the GRNSight-beta from the link provided in the instructions for this assignment
Test 1
Instructions:
- Load Graph - File Menu -> Open
- Restrict Graph to Viewport - Check
- Hide/Show Edge Weights - Select "Show With Mouse Over"
Result:
Test 2
Instructions:
- Load Graph - File Menu -> Import SIF
- Restrict Graph to Viewport - Check
- Hide/Show Edge Weights - Select "Show With Mouse Over"
Test 3
Instructions:
- Load Graph - File Menu -> Import GraphML
- Restrict Graph to Viewport - Check
- Hide/Show Edge Weights - Select "Show With Mouse Over"
Test 4
Instructions:
- Load Graph - File Menu -> Open
- Restrict Graph to Viewport - Uncheck
- Hide/Show Edge Weights - Select "Show With Mouse Over"
Test 5
Instructions:
- Load Graph - File Menu -> Import SIF
- Restrict Graph to Viewport - Uncheck
- Hide/Show Edge Weights - Select "Show With Mouse Over"
Test 6
Instructions:
- Load Graph - File Menu -> Import GraphML
- Restrict Graph to Viewport - Uncheck
- Hide/Show Edge Weights - Select "Show With Mouse Over"
Test 7
Instructions:
- Load Graph - File Menu -> Open
- Restrict Graph to Viewport - Check
- Hide/Show Edge Weights - Select "Always Show Edge Weights"
Test 8
Instructions:
- Load Graph - File Menu -> Import SIF
- Restrict Graph to Viewport - Check
- Hide/Show Edge Weights - Select "Always Show Edge Weights"
Test 9
Instructions:
- Load Graph - File Menu -> Import GraphML
- Restrict Graph to Viewport - Check
- Hide/Show Edge Weights - Select "Always Show Edge Weights"
Test 10
Instructions:
- Load Graph - File Menu -> Open
- Restrict Graph to Viewport - Uncheck
- Hide/Show Edge Weights - Select "Always Show Edge Weights"
Test 11
Instructions:
- Load Graph - File Menu -> Import SIF
- Restrict Graph to Viewport - Uncheck
- Hide/Show Edge Weights - Select "Always Show Edge Weights"
Test 12
Instructions:
- Load Graph - File Menu -> Import GraphML
- Restrict Graph to Viewport - Uncheck
- Hide/Show Edge Weights - Select "Always Show Edge Weights"
Test 13
Instructions:
- Load Graph - File Menu -> Open
- Restrict Graph to Viewport - Check
- Hide/Show Edge Weights - Select "Never Show Edge Weights"
Test 14
Instructions:
- Load Graph - File Menu -> Import SIF
- Restrict Graph to Viewport - Check
- Hide/Show Edge Weights - Select "Never Show Edge Weights"
Test 15
Instructions:
- Load Graph - File Menu -> Import GraphML
- Restrict Graph to Viewport - Check
- Hide/Show Edge Weights - Select "Never Show Edge Weights"
Test 16
Instructions:
- Load Graph - File Menu -> Open
- Restrict Graph to Viewport - Uncheck
- Hide/Show Edge Weights - Select "Never Show Edge Weights"
Test 17
Instructions:
- Load Graph - File Menu -> Import SIF
- Restrict Graph to Viewport - Uncheck
- Hide/Show Edge Weights - Select "Never Show Edge Weights"
Test 18
Instructions:
- Load Graph - File Menu -> Import GraphML
- Restrict Graph to Viewport - Uncheck
- Hide/Show Edge Weights - Select "Never Show Edge Weights"
Ensemble URL
curl 'http://rest.ensembl.org/lookup/symbol/saccharomyces_cerevisiae/ACT1?' -H 'Content-type:application/json'
Acknowledgements
ArashLari (talk) 15:36, 30 October 2017 (PDT) Arash Lari
BIOL/CMSI 367-01: Biological Databases Fall 2017
Assignments
- Week 1
- Week 2
- Week 3
- Week 4
- Week 5
- Week 6
- Week 7
- Week 8
- Week 9
- Week 10
- Week 11
- Week 12
- Week 13
- Week 14
- Week 15
- Week 16
Journal Entries:
- ArashLari Week 2
- ArashLari Week 3
- ArashLari Week 4
- ArashLari Week 5
- ArashLari Week 6
- ArashLari Week 7
- ArashLari Week 8
- ArashLari Week 9
- ArashLari Week 10
- ArashLari Week 11
- ArashLari Week 12
- ArashLari Week 13
- ArashLari Week 14
- ArashLari Week 15
- ArashLari Week 16
Shared Journals:
- ArashLari Week 1 Journal
- ArashLari Week 2 Journal
- ArashLari Week 3 Journal
- ArashLari Week 4 Journal
- ArashLari Week 5 Journal
- ArashLari Week 6 Journal
- ArashLari Week 7 Journal
- ArashLari Week 8 Journal
- ArashLari Week 9 Journal
- ArashLari Week 10 Journal
- ArashLari Week 11 Journal
- ArashLari Week 12 Journal
- ArashLari Week 13 Journal
- ArashLari Week 14 Journal
- ArashLari Week 15 Journal
- ArashLari Week 16 Journal
- Page Desiigner
