Difference between revisions of "ArashLari Week 9"

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(→‎Observations: uploaded image)
(→‎Acknowledgements: added them)
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= Acknowledgements =
 
= Acknowledgements =
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Nicole Kalcic was my partner and we met up once and worked over text message. I also worked with Zach Van Ysseldyk and Antoni Porras on the Web API section and we figured out how to return the desired deliverable together.
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While I worked with the people noted above, this individual journal entry was completed by me and not copied from another source.
 
[[User:ArashLari|ArashLari]] ([[User talk:ArashLari|talk]]) 15:36, 30 October 2017 (PDT)
 
[[User:ArashLari|ArashLari]] ([[User talk:ArashLari|talk]]) 15:36, 30 October 2017 (PDT)
 
{{Template:ArashLari}}
 
{{Template:ArashLari}}

Revision as of 06:01, 31 October 2017

Electronic Workbook

For the purposes of testing I used the following files:

  • 21-genes_31-edges_Schade-data_estimation_output.xlsx
  • 21-genes_31-edges_Schade-data_estimation_output.sif
  • 21-genes_31-edges_Schade-data_estimation_output.graphml

Then proceed to the GRNSight-beta from the link provided in the instructions for this assignment

Test 1

Instructions:

  • Load Graph - File Menu -> Open
  • Restrict Graph to Viewport - Check
  • Hide/Show Edge Weights - Select "Show With Mouse Over"

Result: PASSED

Test 2

Instructions:

  • Load Graph - File Menu -> Import SIF
  • Restrict Graph to Viewport - Check
  • Hide/Show Edge Weights - Select "Show With Mouse Over"

Result: PASSED

Test 3

Instructions:

  • Load Graph - File Menu -> Import GraphML
  • Restrict Graph to Viewport - Check
  • Hide/Show Edge Weights - Select "Show With Mouse Over"

Result: PASSED

Test 4

Instructions:

  • Load Graph - File Menu -> Open
  • Restrict Graph to Viewport - Uncheck
  • Hide/Show Edge Weights - Select "Show With Mouse Over"

Result: PASSED

Test 5

Instructions:

  • Load Graph - File Menu -> Import SIF
  • Restrict Graph to Viewport - Uncheck
  • Hide/Show Edge Weights - Select "Show With Mouse Over"

Result: PASSED

Test 6

Instructions:

  • Load Graph - File Menu -> Import GraphML
  • Restrict Graph to Viewport - Uncheck
  • Hide/Show Edge Weights - Select "Show With Mouse Over"

Result: PASSED

Test 7

Instructions:

  • Load Graph - File Menu -> Open
  • Restrict Graph to Viewport - Check
  • Hide/Show Edge Weights - Select "Always Show Edge Weights"

Result: PASSED

Test 8

Instructions:

  • Load Graph - File Menu -> Import SIF
  • Restrict Graph to Viewport - Check
  • Hide/Show Edge Weights - Select "Always Show Edge Weights"

Result: PASSED

Test 9

Instructions:

  • Load Graph - File Menu -> Import GraphML
  • Restrict Graph to Viewport - Check
  • Hide/Show Edge Weights - Select "Always Show Edge Weights"

Result: PASSED

Test 10

Instructions:

  • Load Graph - File Menu -> Open
  • Restrict Graph to Viewport - Uncheck
  • Hide/Show Edge Weights - Select "Always Show Edge Weights"

Result: PASSED

Test 11

Instructions:

  • Load Graph - File Menu -> Import SIF
  • Restrict Graph to Viewport - Uncheck
  • Hide/Show Edge Weights - Select "Always Show Edge Weights"

Result: PASSED

Test 12

Instructions:

  • Load Graph - File Menu -> Import GraphML
  • Restrict Graph to Viewport - Uncheck
  • Hide/Show Edge Weights - Select "Always Show Edge Weights"

Result: PASSED

Test 13

Instructions:

  • Load Graph - File Menu -> Open
  • Restrict Graph to Viewport - Check
  • Hide/Show Edge Weights - Select "Never Show Edge Weights"

Result: PASSED

Test 14

Instructions:

  • Load Graph - File Menu -> Import SIF
  • Restrict Graph to Viewport - Check
  • Hide/Show Edge Weights - Select "Never Show Edge Weights"

Result: PASSED

Test 15

Instructions:

  • Load Graph - File Menu -> Import GraphML
  • Restrict Graph to Viewport - Check
  • Hide/Show Edge Weights - Select "Never Show Edge Weights"

Result: PASSED

Test 16

Instructions:

  • Load Graph - File Menu -> Open
  • Restrict Graph to Viewport - Uncheck
  • Hide/Show Edge Weights - Select "Never Show Edge Weights"

Result: PASSED

Test 17

Instructions:

  • Load Graph - File Menu -> Import SIF
  • Restrict Graph to Viewport - Uncheck
  • Hide/Show Edge Weights - Select "Never Show Edge Weights"

Result: PASSED

Test 18

Instructions:

  • Load Graph - File Menu -> Import GraphML
  • Restrict Graph to Viewport - Uncheck
  • Hide/Show Edge Weights - Select "Never Show Edge Weights"

Result: PASSED

Observations

While they all passed, it should be noted that for tests 7 through 12, the user can technically see all the numbers, but sometimes they might overlap and become hard to read. This can be seen in the following image:

ArashObservation.png

Ensemble URL

curl 'http://rest.ensembl.org/lookup/symbol/saccharomyces_cerevisiae/ACT1?' -H 'Content-type:application/json'

Acknowledgements

Nicole Kalcic was my partner and we met up once and worked over text message. I also worked with Zach Van Ysseldyk and Antoni Porras on the Web API section and we figured out how to return the desired deliverable together. While I worked with the people noted above, this individual journal entry was completed by me and not copied from another source. ArashLari (talk) 15:36, 30 October 2017 (PDT) Arash Lari

BIOL/CMSI 367-01: Biological Databases Fall 2017

Assignments


Journal Entries:

Shared Journals:

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