Difference between revisions of "Nicolekalcic Week 9"

From LMU BioDB 2017
Jump to: navigation, search
(test answers)
(updated tests)
Line 16: Line 16:
  
 
*Test 1:
 
*Test 1:
 +
**Instructions:
 +
***Load Graph - File Menu > Open
 +
***Restrict Graph to Viewport - Check
 +
***Hide/Show Edge Weights - Select "Show With Mouse Over"
 
**PASSED
 
**PASSED
 
*Test 2:
 
*Test 2:
 +
**Instructions:
 +
***Load Graph - File Menu > Import SIF
 +
***Restrict Graph to Viewport - Check
 +
***Hide/Show Edge Weights - Select "Show With Mouse Over"
 
**PASSED
 
**PASSED
 
*Test 3:
 
*Test 3:
 +
**Instructions:
 +
***Load Graph - File Menu > Import GraphML
 +
***Restrict Graph to Viewport - Check
 +
***Hide/Show Edge Weights - Select "Show With Mouse Over"
 
**PASSED
 
**PASSED
 
*Test 4:
 
*Test 4:
 +
**Instructions:
 +
***Load Graph - File Menu > Open
 +
***Restrict Graph to Viewport - Uncheck
 +
***Hide/Show Edge Weights - Select "Show With Mouse Over"
 
**PASSED
 
**PASSED
 
*Test 5:
 
*Test 5:
 +
***Load Graph - File Menu > Import SIF
 +
***Restrict Graph to Viewport - Uncheck
 +
***Hide/Show Edge Weights - Select "Show With Mouse Over"
 +
**Instructions:
 
**PASSED
 
**PASSED
 
*Test 6:
 
*Test 6:
 +
**Instructions:
 +
***Load Graph - File Menu > Import GraphML
 +
***Restrict Graph to Viewport - Uncheck
 +
***Hide/Show Edge Weights - Select "Show With Mouse Over"
 
**PASSED
 
**PASSED
 
*Test 7:
 
*Test 7:
 +
**Instructions:
 +
***Load Graph - File Menu > Open
 +
***Restrict Graph to Viewport - Check
 +
***Hide/Show Edge Weights - Select "Always Show Edge Weights"
 
**PASSED
 
**PASSED
 
*Test 8:
 
*Test 8:
 +
**Instructions:
 +
***Load Graph - File Menu > Import SIF
 +
***Restrict Graph to Viewport - Check
 +
***Hide/Show Edge Weights - Select "Always Show Edge Weights"
 
**PASSED
 
**PASSED
 
*Test 9:
 
*Test 9:
 +
**Instructions
 +
***Load Graph - File Menu > Import GraphML
 +
***Restrict Graph to Viewport - Check
 +
***Hide/Show Edge Weights - Select "Always Show Edge Weights"
 
**PASSED
 
**PASSED
 
*Test 10:
 
*Test 10:
 +
**Instructions:
 +
***Load Graph - File Menu > Open
 +
***Restrict Graph to Viewport - Uncheck
 +
***Hide/Show Edge Weights - Select "Always Show Edge Weights"
 
**PASSED
 
**PASSED
 
*Test 11:
 
*Test 11:
 +
**Instructions:
 +
***Load Graph - File Menu > Import SIF
 +
***Restrict Graph to Viewport - Uncheck
 +
***Hide/Show Edge Weights - Select "Always Show Edge Weights"
 
**PASSED
 
**PASSED
 
*Test 12:
 
*Test 12:
 +
**Instructions:
 +
***Load Graph - File Menu > Import GraphML
 +
***Restrict Graph to Viewport - Uncheck
 +
***Hide/Show Edge Weights - Select "Always Show Edge Weights"
 
**PASSED
 
**PASSED
 
*Test 13:
 
*Test 13:
 +
**Instructions:
 +
***Load Graph - File Menu > Open
 +
***Restrict Graph to Viewport - Check
 +
***Hide/Show Edge Weights - Select "Never Show Edge Weights"
 
**PASSED
 
**PASSED
 
*Test 14:
 
*Test 14:
 +
**Instructions:
 +
***Load Graph - File Menu > Import SIF
 +
***Restrict Graph to Viewport - Check
 +
***Hide/Show Edge Weights - Select "Never Show Edge Weights"
 
**PASSED
 
**PASSED
 
*Test 15:
 
*Test 15:
 +
**Instructions:
 +
***Load Graph - File Menu > Import GraphML
 +
***Restrict Graph to Viewport - Check
 +
***Hide/Show Edge Weights - Select "Never Show Edge Weights"
 
**PASSED
 
**PASSED
 
*Test 16:
 
*Test 16:
 +
**Instructions:
 +
***Load Graph - File Menu > Open
 +
***Restrict Graph to Viewport - Uncheck
 +
***Hide/Show Edge Weights - Select "Never Show Edge Weights"
 
**PASSED
 
**PASSED
 
*Test 17:
 
*Test 17:
 +
**Instructions:
 +
***Load Graph - File Menu > Import SIF
 +
***Restrict Graph to Viewport - Uncheck
 +
***Hide/Show Edge Weights - Select "Never Show Edge Weights"
 
**PASSED
 
**PASSED
 
*Test 18:
 
*Test 18:
 +
**Instructions:
 +
***Load Graph - File Menu > Import GraphML
 +
***Restrict Graph to Viewport - Uncheck
 +
***Hide/Show Edge Weights - Select "Never Show Edge Weights"
 
**PASSED
 
**PASSED
  

Revision as of 07:10, 31 October 2017

Journal Week 9 - Nicole Kalcic

Part 1: GRNsight Testing

For the purposes of testing I used these files:

  • 21-genes_31-edges_Schade-data_estimation_output.xlsx
  • 21-genes_31-edges_Schade-data_estimation_output.sif
  • 21-genes_31-edges_Schade-data_estimation_output.graphml


A test passing means that it satisfied all the criteria detailed in the instructions.

Arash and I used the same files in order to compare after testing.


  • Test 1:
    • Instructions:
      • Load Graph - File Menu > Open
      • Restrict Graph to Viewport - Check
      • Hide/Show Edge Weights - Select "Show With Mouse Over"
    • PASSED
  • Test 2:
    • Instructions:
      • Load Graph - File Menu > Import SIF
      • Restrict Graph to Viewport - Check
      • Hide/Show Edge Weights - Select "Show With Mouse Over"
    • PASSED
  • Test 3:
    • Instructions:
      • Load Graph - File Menu > Import GraphML
      • Restrict Graph to Viewport - Check
      • Hide/Show Edge Weights - Select "Show With Mouse Over"
    • PASSED
  • Test 4:
    • Instructions:
      • Load Graph - File Menu > Open
      • Restrict Graph to Viewport - Uncheck
      • Hide/Show Edge Weights - Select "Show With Mouse Over"
    • PASSED
  • Test 5:
      • Load Graph - File Menu > Import SIF
      • Restrict Graph to Viewport - Uncheck
      • Hide/Show Edge Weights - Select "Show With Mouse Over"
    • Instructions:
    • PASSED
  • Test 6:
    • Instructions:
      • Load Graph - File Menu > Import GraphML
      • Restrict Graph to Viewport - Uncheck
      • Hide/Show Edge Weights - Select "Show With Mouse Over"
    • PASSED
  • Test 7:
    • Instructions:
      • Load Graph - File Menu > Open
      • Restrict Graph to Viewport - Check
      • Hide/Show Edge Weights - Select "Always Show Edge Weights"
    • PASSED
  • Test 8:
    • Instructions:
      • Load Graph - File Menu > Import SIF
      • Restrict Graph to Viewport - Check
      • Hide/Show Edge Weights - Select "Always Show Edge Weights"
    • PASSED
  • Test 9:
    • Instructions
      • Load Graph - File Menu > Import GraphML
      • Restrict Graph to Viewport - Check
      • Hide/Show Edge Weights - Select "Always Show Edge Weights"
    • PASSED
  • Test 10:
    • Instructions:
      • Load Graph - File Menu > Open
      • Restrict Graph to Viewport - Uncheck
      • Hide/Show Edge Weights - Select "Always Show Edge Weights"
    • PASSED
  • Test 11:
    • Instructions:
      • Load Graph - File Menu > Import SIF
      • Restrict Graph to Viewport - Uncheck
      • Hide/Show Edge Weights - Select "Always Show Edge Weights"
    • PASSED
  • Test 12:
    • Instructions:
      • Load Graph - File Menu > Import GraphML
      • Restrict Graph to Viewport - Uncheck
      • Hide/Show Edge Weights - Select "Always Show Edge Weights"
    • PASSED
  • Test 13:
    • Instructions:
      • Load Graph - File Menu > Open
      • Restrict Graph to Viewport - Check
      • Hide/Show Edge Weights - Select "Never Show Edge Weights"
    • PASSED
  • Test 14:
    • Instructions:
      • Load Graph - File Menu > Import SIF
      • Restrict Graph to Viewport - Check
      • Hide/Show Edge Weights - Select "Never Show Edge Weights"
    • PASSED
  • Test 15:
    • Instructions:
      • Load Graph - File Menu > Import GraphML
      • Restrict Graph to Viewport - Check
      • Hide/Show Edge Weights - Select "Never Show Edge Weights"
    • PASSED
  • Test 16:
    • Instructions:
      • Load Graph - File Menu > Open
      • Restrict Graph to Viewport - Uncheck
      • Hide/Show Edge Weights - Select "Never Show Edge Weights"
    • PASSED
  • Test 17:
    • Instructions:
      • Load Graph - File Menu > Import SIF
      • Restrict Graph to Viewport - Uncheck
      • Hide/Show Edge Weights - Select "Never Show Edge Weights"
    • PASSED
  • Test 18:
    • Instructions:
      • Load Graph - File Menu > Import GraphML
      • Restrict Graph to Viewport - Uncheck
      • Hide/Show Edge Weights - Select "Never Show Edge Weights"
    • PASSED

Part 2: Web Service API Exploration

Electronic Journal

Acknowledgements

  • I communicated with my partner Arash Lari about the assignment. We met once and then texted about the rest of the assignment. Arash met with Zach Van Ysseldyk and Antoni Porras in order to help us complete the second part of the assignment.
  • Dr. Dondi gave in class lectures on how to begin the API web service exploration and provided the class with several online resources.

While I worked with the people noted above, this individual journal entry was completed by me and not copied from another source.

Nicolekalcic (talk) 18:35, 30 October 2017 (PDT)


References


Nicole Kalcic's Homepage


Assignment: Week 1 Shared Journal: Class Journal Week 1 Individual Journal: User Page

Assignment: Week 2 Shared Journal: Class Journal Week 2 Individual Journal: Nicolekalcic Week 2

Assignment: Week 3 Shared Journal: Class Journal Week 3 Individual Journal: Nicolekalcic Week 3

Assignment: Week 4 Shared Journal: Class Journal Week 4 Individual Journal: Nicolekalcic Week 4

Assignment: Week 5 Shared Journal: Class Journal Week 5 Individual Journal: Nicolekalcic Week 5

Assignment: Week 6 Shared Journal: Class Journal Week 6 Individual Journal: Nicolekalcic Week 6

Assignment: Week 7 Shared Journal: Class Journal Week 7 Individual Journal: NicoleKalcic Week 7

Assignment: Week 8 Shared Journal: Class Journal Week 8 Individual Journal: NicoleKalcic Week 8

Assignment: Week 9 Shared Journal: Class Journal Week 9 Individual Journal: Nicolekalcic Week 9

Assignment: Week 10 Shared Journal: Class Journal Week 10 Individual Journal: Nicolekalcic Week 10

Assignment: Week 11 Shared Journal: Not Available Individual Journal: Nicolekalcic Week 11

Assignment: Week 12 Shared Journal: Not Available Individual Journal: Nicolekalcic Week 12

Assignment: Week 14 Shared Journal: Not Available Individual Journal: Nicolekalcic Week 14

Assignment: Week 15 Shared Journal: Not Available Individual Journal: Nicolekalcic Week 15

Retrieved from "https://xmlpipedb.lmucs.io/biodb/fall2017/index.php?title=Nicolekalcic_Week_9&oldid=3715"