Difference between revisions of "Dbashour Week 3"

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(page created with links to outside pages)
 
(identifiers added)
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Curl Command used to retrieve info:
  
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curl -X POST -d "pre_text=cgatggtacatggagtccagtagccgtagtgatgagatcgatgagctagc&output=Verbose&code=Standard&submit=Submit" http://web.expasy.org/cgi-bin/translate/dna_aa
  
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Are there any links to other pages within the ExPASy translation server’s responses? List them and state where they go. (of course, if you aren’t sure, you can always go there with a web browser or curl)
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Command used to get "just the answers"
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yes there are:
 
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#http://web.expasy.org/favicon.ico
 
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#* This is the icon
 
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curl -X POST -d "pre_text=cgatggtacatggagtccagtagccgtagtgatgagatcgatgagctagc&output=Verbose&code=Standard&submit=Submit" http://web.expasy.org/cgi-bin/translate/dna_aa | sed "1,47d" | sed "13q" | sed "s/<[^>]*>//g"
  
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Links to other pages:
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#http://www.w3.org/TR/html4/loose.dtd
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#*A HTML document "which includes presentation attributes and elements that W3C expects to phase out as support for style sheets matures"
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#http://web.expasy.org/favicon.ico
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#* A picture of the logo used on the page tab
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#/css/sib_css/sib.css
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#*A template laying out how the page should be formatted
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#/css/sib_css/sib_print.css
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#*A template laying out how the page should be formatted for printing
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#/css/base.css
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#*Another template for laying out the format of the page
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#http://www.isb-sib.ch
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#* Link to Swiss Institute of Bioinformatics Homepage
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#http://www.expasy.org
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#* Link to the ExPasy Bioinformatics Resource Portal Home
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#http://web.expasy.org/translate
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#* Link to the Translate Tool page (without any input in)
 
#http://en.wikipedia.org/wiki/Open_reading_frame
 
#http://en.wikipedia.org/wiki/Open_reading_frame
 
#* Wikipedia page for open reading frame
 
#* Wikipedia page for open reading frame
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#* Java script code used within the website
 
#* Java script code used within the website
  
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Are there any identifiers in the ExPASy translation server’s responses? List them and state what you think they identify.
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Identifiers:
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#sib_top
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#*The very top of the page
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#sib_container
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#* The container for the whole page returned
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#sib_header_small
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#* The small bar header at the top of the page
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#sib_expasy_logo
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#* The logo in the top left corner of the page
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#resource_header
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#* Not obvious, but possibly another formatting section for the header of the page
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#sib_header_nav
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#* The top right of the page with navigational buttons to home and contact
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#sib_body
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#* The portion of the page including the text and reading frames returned
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#sib_footer
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#* The footer at the bottom of the page
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#sib_footer_content
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#* The text/content included in the footer at the bottom of the page
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#sib_footer_right
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#* The text/content in the bottom right footer of the page
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#sb_footer_gototop
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#* The button going to the top of the page included in the footer

Revision as of 23:19, 18 September 2017

Curl Command used to retrieve info: 

curl -X POST -d "pre_text=cgatggtacatggagtccagtagccgtagtgatgagatcgatgagctagc&output=Verbose&code=Standard&submit=Submit" http://web.expasy.org/cgi-bin/translate/dna_aa

Command used to get "just the answers" 

curl -X POST -d "pre_text=cgatggtacatggagtccagtagccgtagtgatgagatcgatgagctagc&output=Verbose&code=Standard&submit=Submit" http://web.expasy.org/cgi-bin/translate/dna_aa | sed "1,47d" | sed "13q" | sed "s/<[^>]*>//g"

Links to other pages:

  1. http://www.w3.org/TR/html4/loose.dtd
    • A HTML document "which includes presentation attributes and elements that W3C expects to phase out as support for style sheets matures"
  2. http://web.expasy.org/favicon.ico
    • A picture of the logo used on the page tab
  3. /css/sib_css/sib.css
    • A template laying out how the page should be formatted
  4. /css/sib_css/sib_print.css
    • A template laying out how the page should be formatted for printing
  5. /css/base.css
    • Another template for laying out the format of the page
  6. http://www.isb-sib.ch
    • Link to Swiss Institute of Bioinformatics Homepage
  7. http://www.expasy.org
    • Link to the ExPasy Bioinformatics Resource Portal Home
  8. http://web.expasy.org/translate
    • Link to the Translate Tool page (without any input in)
  9. http://en.wikipedia.org/wiki/Open_reading_frame
    • Wikipedia page for open reading frame
  10. http://web.expasy.org/cgi-bin/translate/dna_sequences?/work/expasy/tmp/http/seqdna.28321,1
    • ExPASy translate tool highlighting open reading frames for frame 1
  11. http://web.expasy.org/cgi-bin/translate/dna_sequences?/work/expasy/tmp/http/seqdna.28321,2
    • ExPASy translate tool highlighting open reading frames for frame 2
  12. http://web.expasy.org/cgi-bin/translate/dna_sequences?/work/expasy/tmp/http/seqdna.28321,3
    • ExPASy translate tool highlighting open reading frames for frame 3
  13. http://web.expasy.org/cgi-bin/translate/dna_sequences?/work/expasy/tmp/http/seqdna.28321,4
    • ExPASy translate tool highlighting open reading frames for frame 1
  14. http://web.expasy.org/cgi-bin/translate/dna_sequences?/work/expasy/tmp/http/seqdna.28321,5
    • ExPASy translate tool highlighting open reading frames for frame 2
  15. http://web.expasy.org/cgi-bin/translate/dna_sequences?/work/expasy/tmp/http/seqdna.28321,6
    • ExPASy translate tool highlighting open reading frames for frame 3
  16. http://www.isb-sib.ch
    • Swiss Institute of Bioinformatics link at bottom of page
  17. https://www.expasy.org/disclaimer.html
    • ExPASy disclaimer
  18. https://www.google-analytics.com/ga.js
    • Java script code used within the website

Identifiers:

  1. sib_top
    • The very top of the page
  2. sib_container
    • The container for the whole page returned
  3. sib_header_small
    • The small bar header at the top of the page
  4. sib_expasy_logo
    • The logo in the top left corner of the page
  5. resource_header
    • Not obvious, but possibly another formatting section for the header of the page
  6. sib_header_nav
    • The top right of the page with navigational buttons to home and contact
  7. sib_body
    • The portion of the page including the text and reading frames returned
  8. sib_footer
    • The footer at the bottom of the page
  9. sib_footer_content
    • The text/content included in the footer at the bottom of the page
  10. sib_footer_right
    • The text/content in the bottom right footer of the page
  11. sb_footer_gototop
    • The button going to the top of the page included in the footer
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