Difference between revisions of "Emmatyrnauer Week 11"

Revision as of 19:01, 13 November 2017

Electronic Notebook

Example Annotated Bibliography

Schade, B., Jansen, G., Whiteway, M., Entian, K.D., & Thomas, D.Y. (2004). Cold Adaptation in Budding Yeast. Molecular Biology of the Cell, 15, 5492-5502. doi: 10.1091/mbc.E04-03-0167

• PubMed Abstract: http://www.ncbi.nlm.nih.gov/pubmed/15483057
• PubMed Central: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC532028/
• Publisher Full Text (HTML): http://www.molbiolcell.org/content/15/12/5492.long
• Publisher Full Text (PDF): http://www.molbiolcell.org/content/15/12/5492.full.pdf+html
• Copyright: 2004 by the American Society for Cell Biology (information found on PDF version of article); article is not Open Access, but is freely available 2 months after publication
• Publisher: American Society for Cell Biology (scientific society)
• Availability: in print and online
• Did LMU pay a fee for this article: no

Annotated Bibliography

Paper 1

Homma, T., Iwahashi, H., & Komatsu, Y. (2003). Yeast gene expression during growth at low temperature. Cryobiology, 46(3), 230-237.

• PubMed Abstract: https://www.ncbi.nlm.nih.gov/pubmed/12818212
• PubMed Central: not available
• Publisher Full Text (HTML): http://sq4ya5rf2q.search.serialssolutions.com/?V=1.0&sid=PubMed:LinkOut&pmid=12818212
• Publisher Full Text (PDF): https://electra.lmu.edu:3555/S0011224003000282/1-s2.0-S0011224003000282-main.pdf?_tid=4c9b7cc0-c775-11e7-af71-00000aab0f26&acdnat=1510469407_3e02bee4266fd6a211ea3f6e27b460cf
• Copyright: 2003 by Elsevier Science; article is not Open Access
• Publisher: Elsevier Science
• Availability: online at www.sciencedirect.com
• Did LMU pay a fee for this article: yes

Paper 2

Lashkari, D. A., DeRisi, J. L., McCusker, J. H., Namath, A. F., Gentile, C., Hwang, S. Y., ... & Davis, R. W. (1997). Yeast microarrays for genome wide parallel genetic and gene expression analysis. Proceedings of the National Academy of Sciences, 94(24), 13057-13062.

• PubMed Abstract: https://www.ncbi.nlm.nih.gov/pubmed/9371799
• PubMed Central: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC24262/
• Publisher Full Text (HTML): http://www.pnas.org/content/94/24/13057.long
• Publisher Full Text (PDF): http://www.pnas.org/content/94/24/13057.full.pdf
• Copyright: 1997 by the National Academy of Sciences of the USA
• Publisher: National Academy of Sciences of the USA
• Availability: in print and online
• Did LMU pay a fee for this article: no

Keyword Searches

Use a keyword search for the first three databases/tools and answer the following:

1. PubMed
   • What original keyword(s) did you use? "yeast cold shock"
   • How many results did you get? 108
   • Which terms in which combinations were most useful to narrow down the search? "yeast cold shock microarray data"
   • How many results did you get after narrowing the search? 4
2. Google Scholar
   • What original keyword(s) did you use? "yeast response to cold shock"
   • How many results did you get? 204,000
   • Which terms in which combinations were most useful to narrow down the search? "microarray data from yeast subjected to cold shock."
   • How many results did you get after narrowing the search? 21,500
3. Web of Science
   • What original keyword(s) did you use? "yeast, cold shock"
   • How many results did you get? 218
   • Which terms in which combinations were most useful to narrow down the search? "microarray data, yeast, cold shock"
   • How many results did you get after narrowing the search? 4

Use the advanced search functions for each of these three databases/tools and answer the following:

Advanced search function window for Google Scholar

1. PubMed
   • Which advanced search functions were most useful to narrow down the search? the title function
   • How many results did you get? 22
2. Google Scholar
   • Which advanced search functions were most useful to narrow down the search? See image to the right
   • How many results did you get? 4,820
3. Web of Science
   • Which advanced search functions were most useful to narrow down the search?
   • How many results did you get?

Prospective search results from Web of Science

Aguilera, J., Randez-Gil, F., & Prieto, J.A. (2007). Cold Response in Saccharomyces cerevisiae: New Functions for Old Mechanisms. FEMS Microbiological Reviews, 31, 327–341. doi: 10.1111/j.1574-6976.2007.00066.x

• How many articles does this article cite? 144
• How many articles cite this article? 77

Al-Fageeh, M.B. & Smales, C.M. (2006). Control and Regulation of the Cellular Responses to Cold Shock: the Responses in Yeast and Mammalian Systems. Biochemical Journal, 397, 247–259. doi: 10.1042/BJ20060166

• How many articles does this article cite? 125
• How many articles cite this article? 108

Thieringer, H.A., Jones, P.G.,& Inouye, M. (1998). Cold shock and adaptation. BioEssays, 20, 49–57. doi: 10.1002/(SICI)1521-1878(199801)20:1<49::AID-BIES8>3.0.CO;2-N

• How many articles does this article cite? 76
• How many articles cite this article? 258

Acknowledgements

1. I worked with my homework partner Katie Wright during class and over text.
2. Dr. Dahlquist for explaining the process of creating annotated bibliographies
3. https://scholar.google.com/
4. http://electra.lmu.edu:2179/WOS_GeneralSearch_input.do?product=WOS&search_mode=GeneralSearch&SID=4E3Uh6AVRsXU6VXtMbd&preferencesSaved=
5. https://www.ncbi.nlm.nih.gov/pubmed/

While I worked with the people noted above, this individual journal entry was completed by me and not copied from another source. Emmatyrnauer (talk) 00:18, 12 November 2017 (PST)

References

LMU BioDB 2017. (2017). Week 1. Retrieved August 29, 2017, from https://xmlpipedb.cs.lmu.edu/biodb/fall2017/index.php/Week_11

Links

1. My User Page
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