Difference between revisions of "Cwong34 Week 14"
From LMU BioDB 2017
(Added references, acknowledgments, links, and category) |
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*Locus tag | *Locus tag | ||
*Gene ID | *Gene ID | ||
| + | *Also known as | ||
'''UniProt''' | '''UniProt''' | ||
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'''Ensembl''' | '''Ensembl''' | ||
*DNA sequence | *DNA sequence | ||
| − | *Gene description | + | *Gene description/function |
*Gene ID | *Gene ID | ||
| Line 23: | Line 24: | ||
'''JASPAR''' | '''JASPAR''' | ||
| + | *Gene ID | ||
*Sequence logo | *Sequence logo | ||
*Frequency matrix | *Frequency matrix | ||
| + | |||
| + | =Getting Organized= | ||
| + | *During class, I worked on our team page to map out our deliverables and milestones. I met with our team members to check in on how they are doing and to get a better idea of where our team is in our project. | ||
| + | *I created the deliverables page for our team ([[Gene hAPI Deliverables]]) | ||
=Acknowledgments= | =Acknowledgments= | ||
Revision as of 23:32, 30 November 2017
Gene Database Information
The QA's met, and we chose which information we wanted to take from which databases.
NCBI
- Locus tag
- Gene ID
- Also known as
UniProt
- Protein type/name
- Protein sequence
- Gene ID
- Similar proteins
Ensembl
- DNA sequence
- Gene description/function
- Gene ID
SGD
- Gene ID
- Gene regulation
- Gene ontology
JASPAR
- Gene ID
- Sequence logo
- Frequency matrix
Getting Organized
- During class, I worked on our team page to map out our deliverables and milestones. I met with our team members to check in on how they are doing and to get a better idea of where our team is in our project.
- I created the deliverables page for our team (Gene hAPI Deliverables)
Acknowledgments
References
- LMU BioDB 2017. (2017). Week 14. Retrieved November 28, 2017, from https://xmlpipedb.cs.lmu.edu/biodb/fall2017/index.php/Week_14
BIOL/CMSI 367-01: Biological Databases Fall 2017
Assignments
- Week 1
- Week 2
- Week 3
- Week 4
- Week 5
- Week 6
- Week 7
- Week 8
- Week 9
- Week 10
- Week 11
- Week 12
- Week 14
- Week 15
Journal Entries:
- cwong34 Week 2
- cwong34 Week 3
- cwong34 Week 4
- cwong34 Week 5
- cwong34 Week 6
- cwong34 Week 7
- cwong34 Week 8
- cwong34 Week 9
- cwong34 Week 10
- cwong34 Week 11
- cwong34 Week 12
- cwong34 Week 14
- cwong34 Week 15
Shared Journals:
- cwong34 Week 1 Journal
- cwong34 Week 2 Journal
- cwong34 Week 3 Journal
- cwong34 Week 4 Journal
- cwong34 Week 5 Journal
- cwong34 Week 6 Journal
- cwong34 Week 7 Journal
- cwong34 Week 8 Journal
- cwong34 Week 9 Journal
- cwong34 Week 10 Journal
Group Project
