Difference between revisions of "QLanners Week 15"

Revision as of 00:16, 8 December 2017

On Tuesday December 5th, Antonio and I spent the beginning of class going through each part of deliverables, determining how to most effectively split up the work. We made a quick outline of each deliverable and who will be working on each below:

1. Organized Team deliverables wiki page (or other media (CD or flash drive) with table of contents)
   • Quinn will take care of ensuring all deliverables are organized and delivered properly.
2. Group Report (.doc, .docx or .pdf file)
   • The group report will be a collaborative effort, this outline is just to outline who will probably be contributing most to each section
   1. Abstract
      • Primarily Quinn - with input from everyone
   2. Intro
      • Primarily Quinn
   3. Materials and Methods
      • Primarily Antonio, Eddie, and Simon
   4. Results
      • Primarily Antonio, Eddie, and Simon
   5. Discussion
      • All members
   6. Conclusions
      • All members
   7. Acknowledgements
      • All members
   8. References
      • All members
3. Individual statements of work, assessments, reflections (wiki page, .doc, .docx, .pdf, or e-mailed to both Dr. Dahlquist and Dr. Dionisio)
   • Each member will complete this task individually
4. Group PowerPoint presentation (given on Tuesday, December 12, .ppt, .pptx or .pdf file)
   • All members. Antonio and Quinn will start on this, but all will work to complete. Then practice will be done as full team.
5. Code (GitHub pull request) Each team should coordinate in performing a final integration and integration testing iteration (see Coder milestone for details) which the Interaction and Integration team then submits to the original GRNsight GitHub repository as a single, unified pull request from the class project’s fork
   • Eddie and Simon
6. Supply a README that summarizes the functionality of your team's new feature (.txt or .md, one README per team)
   • Eddie and Simon (Quinn help if needed)
7. Excel spreadsheet with ANOVA results/stem formatting (.xlsx)
   • Antonio
8. PowerPoint of screenshots of stem results (.pptx)
   • Antonio
9. Gene List and GO List files from each significant profile (.txt compressed together in a .zip file)
   • Antonio
10. YEASTRACT "rank by TF" results (.xlsx)
    • Antonio
11. GRNmap input workbook (with network adjacency matrix, .xlsx)
    • Antonio
12. GRNmap output workbook (.xlsx)
    • Antonio
13. Electronic notebook corresponding to these the microarray results files (Week 8, Week 10, and Weeks 11-15) support reproducible research so that all manipulations of the data and files are documented so that someone else could begin with your starting file, follow the protocol, and obtain your results.
    • Antonio

On Thursday, December 7th, the other project managers and I collaborated to create a modified outline for the Group Report. After proposing our modified paper outline to Dr. Dondi and Dr. Dahlquist, a new outline for this final paper was agreed upon. The following image is an outline for this new Group Report:

Along with creating these modified guidelines, I created a Google document and a Google slides for the final group report and group presentation respectively. I started by creating an outline for the presentation, adding titles to a number of slides and working to make a descriptive table of contents.