ArashLari Week 9

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Revision as of 05:53, 31 October 2017 by ArashLari (talk | contribs) (All test instructions)
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Electronic Workbook

For the purposes of testing I used the following files:

  • 21-genes_31-edges_Schade-data_estimation_output.xlsx
  • 21-genes_31-edges_Schade-data_estimation_output.sif
  • 21-genes_31-edges_Schade-data_estimation_output.graphml

Then proceed to the GRNSight-beta from the link provided in the instructions for this assignment

Test 1

Instructions:

  • Load Graph - File Menu -> Open
  • Restrict Graph to Viewport - Check
  • Hide/Show Edge Weights - Select "Show With Mouse Over"

Result:

Test 2

Instructions:

  • Load Graph - File Menu -> Import SIF
  • Restrict Graph to Viewport - Check
  • Hide/Show Edge Weights - Select "Show With Mouse Over"

Test 3

Instructions: Load Graph - File Menu -> Import GraphML Restrict Graph to Viewport - Check Hide/Show Edge Weights - Select "Show With Mouse Over"

Test 4

Instructions: Load Graph - File Menu -> Open Restrict Graph to Viewport - Uncheck Hide/Show Edge Weights - Select "Show With Mouse Over"

Test 5

Instructions: Load Graph - File Menu -> Import SIF Restrict Graph to Viewport - Uncheck Hide/Show Edge Weights - Select "Show With Mouse Over"

Test 6

Instructions: Load Graph - File Menu -> Import GraphML Restrict Graph to Viewport - Uncheck Hide/Show Edge Weights - Select "Show With Mouse Over"

Test 7

Instructions: Load Graph - File Menu -> Open Restrict Graph to Viewport - Check Hide/Show Edge Weights - Select "Always Show Edge Weights"

Test 8

Instructions: Load Graph - File Menu -> Import SIF Restrict Graph to Viewport - Check Hide/Show Edge Weights - Select "Always Show Edge Weights"

Test 9

Instructions: Load Graph - File Menu -> Import GraphML Restrict Graph to Viewport - Check Hide/Show Edge Weights - Select "Always Show Edge Weights"

Test 10

Instructions: Load Graph - File Menu -> Open Restrict Graph to Viewport - Uncheck Hide/Show Edge Weights - Select "Always Show Edge Weights"

Test 11

Instructions: Load Graph - File Menu -> Import SIF Restrict Graph to Viewport - Uncheck Hide/Show Edge Weights - Select "Always Show Edge Weights"

Test 12

Instructions: Load Graph - File Menu -> Import GraphML Restrict Graph to Viewport - Uncheck Hide/Show Edge Weights - Select "Always Show Edge Weights"

Test 13

Instructions: Load Graph - File Menu -> Open Restrict Graph to Viewport - Check Hide/Show Edge Weights - Select "Never Show Edge Weights"

Test 14

Instructions: Load Graph - File Menu -> Import SIF Restrict Graph to Viewport - Check Hide/Show Edge Weights - Select "Never Show Edge Weights"

Test 15

Instructions: Load Graph - File Menu -> Import GraphML Restrict Graph to Viewport - Check Hide/Show Edge Weights - Select "Never Show Edge Weights"

Test 16

Instructions: Load Graph - File Menu -> Open Restrict Graph to Viewport - Uncheck Hide/Show Edge Weights - Select "Never Show Edge Weights"

Test 17

Instructions: Load Graph - File Menu -> Import SIF Restrict Graph to Viewport - Uncheck Hide/Show Edge Weights - Select "Never Show Edge Weights"

Test 18

Instructions: Load Graph - File Menu -> Import GraphML Restrict Graph to Viewport - Uncheck Hide/Show Edge Weights - Select "Never Show Edge Weights"

Ensemble URL

curl 'http://rest.ensembl.org/lookup/symbol/saccharomyces_cerevisiae/ACT1?' -H 'Content-type:application/json'

Acknowledgements

ArashLari (talk) 15:36, 30 October 2017 (PDT) Arash Lari

BIOL/CMSI 367-01: Biological Databases Fall 2017

Assignments


Journal Entries:

Shared Journals:

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