Zvanysse Week 9

Electronic workbook

First, we downloaded three files with different file extensions: .xlsx, .graphml, and .sif. The three files are:

1. https://github.com/dondi/GRNsight/blob/beta/test-files/demo-files/21-genes_31-edges_Schade-data_estimation_output.graphml
2. https://github.com/dondi/GRNsight/blob/beta/test-files/demo-files/21-genes_31-edges_Schade-data_estimation_output.sif
3. https://github.com/dondi/GRNsight/blob/beta/test-files/demo-files/21-genes_31-edges_Schade-data_estimation_output.xlsx

Note how these are the same files as my homework partner, Antonia Porras.

Test 1

First, we went to GRNsight and opened the excel file. We checked to see if any of the nodes would go outside of the view port window if it were to be selected. We did this by dragging the nodes trying to bring them outside of the view port. The test PASSED with no errors.

Test 2

First, we went to GRNsight and imported the sif file. We checked to see if any of the nodes would go outside of the view port window if it were to be selected. We did this by dragging the nodes trying to bring them outside of the view port. The test PASSED with no errors.

Test 3

First, we went to GRNsight and imported the GraphML file. We checked to see if any of the nodes would go outside of the view port window if it were to be selected. We did this by dragging the nodes trying to bring them outside of the view port. The test PASSED with no errors.

Test 4

First, we went to GRNsight and opened the excel file. We checked to see if any of the nodes would go outside of the view port window if it were to be unchecked. We did this by dragging the nodes trying to bring them outside of the view port. The test FAILED with the following errors: Unable to move nodes outside of the box on the right, top, and left, but was able to on the bottom. Below is an example image:

Test 5

First, we went to GRNsight and imported the Sif file. We checked to see if any of the nodes would go outside of the view port window if it were to be unchecked. We did this by dragging the nodes trying to bring them outside of the view port. The test FAILED with the following errors: Unable to move nodes outside of the box on the right, top, and left, but was able to on the bottom. Below is an example image:

Test 6

First, we went to GRNsight and imported the GraphML file. We checked to see if any of the nodes would go outside of the view port window if it were to be unchecked. We did this by dragging the nodes trying to bring them outside of the view port. The test FAILED with the following errors: Unable to move nodes outside of the box on the right, top, and left, but was able to on the bottom. Below is an example image: