Johnllopez Week 14
From LMU BioDB 2017
Revision as of 08:50, 30 November 2017 by Johnllopez616 (talk | contribs) (→Pulling Data: Added how to get the data)
Pulling Data
Thanks to Corrine Wong, I was able to use the following table to figure out what processes had to be made in order to pull certain data from the functions:
NCBI
- Locus tag < Parse from page https://www.ncbi.nlm.nih.gov/gene/854068
- Gene ID < Parse from conversion algorithm
UniProt
- Protein type/name <Parse XML?
- Protein sequence <Parse XML
- Gene ID <Parse XML
- Similar proteins <Could not find on XML, found on Page
Ensembl
- DNA sequence < Pull from http://www.ensembl.org/Saccharomyces_cerevisiae/Transcript/Sequence_cDNA?db=core;g=YJL128C;r=X:178097-180103;t=YJL128C
- Gene description < Pulled from JSON
- Gene ID < Pulled from JSON / Conversion Necessary
SGD
- Gene ID < Pulled from JSON/ Possible conversion necessary
- Gene expression < NO IDEA HOW WE CAN PULL THIS
- Gene regulation <Pull from page https://www.yeastgenome.org/locus/S000005446
- Gene ontology <SUummary in JSON
JASPAR
- Sequence logo
- Frequency matrixon her
