Aporras1 Week 9

User Page: Antonio Porras

Assignment Page: Week 9

Electronic Notebook

1. Selected the following files for our test:
   • 21-genes_31-edges_Schade-data_estimation_output.xlsx
   • 21-genes_31-edges_Schade-data_estimation_output.sif
   • 21-genes_31-edges_Schade-data_estimation_output.graphml
2. Opened up GRNsight - beta

Test one

1. Loaded the excel file.
2. Restricted graph to viewport.
3. Passed test one.

Test two

1. Loaded the sif file.
2. Restricted graph to viewport.
3. Passed test two.

Test three

1. Loaded the GraphML file.
2. Restricted graph to viewport
3. Passed test three.

Test four

1. Loaded the excel file.
2. Unchecked restrict graph to viewport.
3. Failed test four by restricting the graph bounding box.

Test five

1. Loaded the sif file.
2. Unchecked restrict graph to viewport.
3. Failed test five by restricting the graph bounding box.

Test six

1. Loaded the GraphML file.
2. Unchecked restrict graph to viewport.
3. Failed test six by restricting the graph bounding box.

Test seven

1. Loaded the excel file.
2. Restricted graph to viewport.
3. Increased zoom level with slider.
4. Graph box was contained within the viewport and the graph zoomed in.
5. Passed test seven.

Test eight

1. Loaded the sif file.
2. Restricted graph to viewport.
3. Increased zoom level with slider.
4. Graph box was contained within the viewport and the graph zoomed in.
5. Passed test eight.

Test nine

1. Loaded the GraphML file.
2. Restricted graph to viewport.
3. Increased zoom level with slider.
4. Graph box was contained within the viewport and the graph zoomed in.
5. Passed test nine.

Test ten

1. Loaded the excel file.
2. Unchecked restrict graph to viewport.
3. Increased zoom level with slider.
4. Graph bounding box was allowed to extend past the viewport and the graph zoomed in.
5. Passed test ten.

Test eleven

1. Loaded the sif file.
2. Unchecked restrict graph to viewport.
3. Increased zoom level with slider.
4. Graph bounding box was allowed to extend past the viewport and the graph zoomed in.
5. Passed test eleven.

Test twelve

1. Loaded the GraphML file.
2. Unchecked restrict graph to viewport.
3. Increased zoom level with slider.
4. Graph bounding box was allowed to extend past the viewport and the graph zoomed in.
5. Passed test twelve.

Acknowledgements

1. Met outside of class and worked in class with Zach Van Ysseldyk to discuss any questions we had throughout the process of completing the Week 9 assignment.
2. Additionally, worked alongside Arash Lari and Nicole Kalcic to complete the Web Service API Exploration on the Week 9 assignment.

While I worked with the people noted above, this individual journal entry was completed by me and not copied from another source.

Aporras1 (talk) 15:40, 24 October 2017 (PDT)

References

1. LMU BioDB 2017. (2017). Week 9. Retrieved October 24, 2017, from https://xmlpipedb.cs.lmu.edu/biodb/fall2017/index.php/Week_9