Nicolekalcic Week 9

Journal Week 9 - Nicole Kalcic

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Part 1: GRNsight Testing

For the purposes of testing I used these files:

• 21-genes_31-edges_Schade-data_estimation_output.xlsx
• 21-genes_31-edges_Schade-data_estimation_output.sif
• 21-genes_31-edges_Schade-data_estimation_output.graphml

A test passing means that it satisfied all the criteria detailed in the instructions.

Arash and I used the same files in order to compare after testing.

• Test 1:
  • PASSED
• Test 2:
  • PASSED
• Test 3:
  • PASSED
• Test 4:
  • PASSED
• Test 5:
  • PASSED
• Test 6:
  • PASSED
• Test 7:
  • PASSED
• Test 8:
  • PASSED
• Test 9:
  • PASSED
• Test 10:
  • PASSED
• Test 11:
  • PASSED
• Test 12:
  • PASSED
• Test 13:
  • PASSED
• Test 14:
  • PASSED
• Test 15:
  • PASSED
• Test 16:
  • PASSED
• Test 17:
  • PASSED
• Test 18:
  • PASSED

Acknowledgements

• I communicated with my partner Arash Lari about the assignment. We met once and then texted about the rest of the assignment. Arash met with Zach Van Ysseldyk and Antoni Porras in order to help us complete the second part of the assignment.
• Dr. Dondi gave in class lectures on how to begin the API web service exploration and provided the class with several online resources.

While I worked with the people noted above, this individual journal entry was completed by me and not copied from another source.

Nicolekalcic (talk) 18:35, 30 October 2017 (PDT)

References

• LMU BioDB 2017. (2017). Week 9. Retrieved October 30, 2017, from https://xmlpipedb.cs.lmu.edu/biodb/fall2017/index.php/Week_9

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