Page Desiigner
Contents
Page Design Team Members
Coder: Arash Lari
Project Manager/ Quality Assurance: Hayden Hinsch
Data Analyst: Mary Balducci
Designer: Nicole Kalcic
Annotated Bibliography
Mary's contribution:
Pizzaro, Jewett, Nielson, Agosin. (2008) Growth Temperature Exerts Differential Physiological and Transcriptional Responses in Laboratory and Wine Strains of Saccharomyces Cerevisiae. "Applied and Environmental Microbiology", 74, 6358-6368, doi:10.1128/AEM.00602-08
- PubMed Abstract: https://www.ncbi.nlm.nih.gov/pubmed/18723660
- PubMed Central: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2570279/
- HTML format: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2570279/
- PDF format: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2570279/pdf/0602-08.pdf
- Copyright: 2008 American Society for Microbiology. It is open access.
- The publisher is American Society for Microbiology.
- This is a scientific society.
- This article is available both online and in print.
- LMU has not paid a fee for my access to this article.
- I could not find the data associated with this article.
Homma, Iwahashi, Komatsu. (2003) Yeast Gene Expression During Growth at Low Temperature. Cryobiology, 46, doi: 10.1016/S0011-2240(03)00028-2
- PubMed abstract: https://www.ncbi.nlm.nih.gov/pubmed/12818212
- PubMed Central:
- HTML format: http://www.sciencedirect.com/science/article/pii/S0011224003000282?via%3Dihub
- PDF format: https://ac.els-cdn.com/S0011224003000282/1-s2.0-S0011224003000282-main.pdf?_tid=aa7fa05e-c5d2-11e7-88ae-00000aacb361&acdnat=1510289609_6ec25501ce7af9dcc6b521ef8a024164
- Copyright 2003 Elsevier Science (USA). It is open access.
- The publisher is Elsevier.
- This is a for-profit publisher
- This article is available both online and in print.
- LMU has not paid a fee for my access to this article.
- I could not find the data associated with this article.
Hayden's Contribution
Dahlquist, K. D., Fitzpatrick, B. G., Camacho, E. T., Entzminger, S. D., & Wanner, N. C. (2015). Parameter Estimation for Gene Regulatory Networks from Microarray Data: Cold Shock Response in Saccharomyces cerevisiae. Bulletin of Mathematical Biology, 77(8), 1457–1492. http://doi.org/10.1007/s11538-015-0092-6
- PubMed Abstract: https://www.ncbi.nlm.nih.gov/pubmed/26420504
- PubMed Central: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4636536/
- Publisher Full Text (HTML): https://link.springer.com/article/10.1007/s11538-015-0092-6
- Publisher Full Text (PDF): https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4636536/pdf/11538_2015_Article_92.pdf
- Copyright: The Author(s) 2015. Open Access: This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made.
- Publisher: Bulletin of Mathematical Biology(scientific society)
- Availability: Online
- Did LMU pay a fee for this article: No
- Data: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4636536/bin/11538_2015_92_MOESM1_ESM.zip
Ando, A., Nakamura, T., Murata, Y., Takagi, H. and Shima, J. (2007), Identification and classification of genes required for tolerance to freeze–thaw stress revealed by genome-wide screening of Saccharomyces cerevisiae deletion strains. FEMS Yeast Research, 7: 244–253. doi:10.1111/j.1567-1364.2006.00162.x
- PubMed Abstract: https://www.ncbi.nlm.nih.gov/pubmed/16989656
- PubMed Central: N/A
- Publisher Full Text (HTML): https://academic.oup.com/femsyr/article/7/2/244/616825?searchresult=1
- Publisher Full Text (PDF): http://onlinelibrary.wiley.com/doi/10.1111/j.1567-1364.2006.00162.x/epdf
- Copyright: Copyright © 2007, Oxford University Press; Open Access after time has elapsed: This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. You must ask permission from the publisher to use the article.
- Publisher: Published by Oxford University Press(respected open access organization)
- Availability: Online and in print
- Did LMU pay a fee for this article: No
- Data: I couldn't find any supplementary data other than the data provided in the article.
Executive Summaries
Week 11 Executive Summaries
Arash
This week, I worked on researching the given article and the development terms within it as well as prepare a presentation on the article. I also began thinking of some page layout ideas with Nicole to prepare to implement in the coming weeks. ArashLari (talk) 02:09, 14 November 2017 (PST)
Mary
This week, I worked on creating an annotated bibliography. The articles I found were primary sources about experiments done involving cold shock on yeast, and the use of microarrays to show results. I used multiple databases to find these articles, and while doing so I learned what key words got me the results closest to what I wanted. While writing the annotated bibliography, I also learned more about the articles, such as when they were written, who published them, what kind of publisher they are, and other information. All of this is recorded in my Week 11 page.
Mbalducc (talk) 23:03, 13 November 2017 (PST)
Nicole
This past week, I read the article The Data-Driven Design Era in Professional Web Design by L.A. Liikkanen. This allowed me to complete my individual journal: an informative outline of the article and list of ten definitions. Arash and I worked together to complete a 15 minute presentation that we are going to give on Tuesday. The presentation gives an overview of our individual journals and what we each learned. You can access more information on what I did this week here: Nicolekalcic Week 11. Nicolekalcic (talk) 01:27, 14 November 2017 (PST)
Hayden
This week I created part of the annotated bibliography we will be using for our final project. I conducted searched for "yeast cold shock microarray" articles and found which two articles I was going to use for the bibliography. The majority of the time this week was spent on finding the information needed for the annotated bibliography which can be found below on this page. More detailed information can be found on my hhinsch Week 11 page. This week I became proficient in finding reliable article to use for our final project. This week we also created the group's template and wiki page. Hhinsch (talk) 22:43, 13 November 2017 (PST)
Week 12 Executive Summaries
Arash
Mary
Nicole
Hayden
Team Progress Reflections
Week 11 Team Progress Reflections
Nicole
- What worked?
- We all work well in our positions. Arash and I worked together recently, so it was easy to coordinate what we are going to do as coder and designer. Everyone was open to opinions on the page and team name. Also, everyone communicated what they were having trouble finishing.
- What didn't work?
- Like Mary said, we weren't able to meet in person. We planned out our meetup during class, but Friday ended up being a busy day for everyone.
- What will I do next to fix what didn't work?
- Next week I will make sure to check in more with my partners. Even if we don't meet up, it is important to make sure everyone is caught up on the assignment and their individual parts.
Mary
- What worked?
- I think as a team, we did a good job communicating and figuring out what needed to be done, and who would do each part.
- What didn't work?
- We did not meet up outside of class. We had planned to, but we all ended up having conflicts so we couldn't meet.
- What will I do next to fix what didn't work?
- I think this can be fixed just by making sure we all communicate in other ways, which is what we did. Through text messages we were able to talk about the assignment and help each other.
Hayden
- What worked?
- We are all doing well communicating and completing our deliverables as individuals and as a group.
- What didn't work?
- Everything worked well in regards to the group, but I did have some trouble finding all the information needed to create an annotated bibliography for the articles I used. Google Scholar gave me way too many results, and PubMed did not have a lot of articles that were either free or LMU had paid for.
- What will I do next to fix what didn't work?
- I will continue to ask questions in class. I also feel more confident about finding useful articles after the completion of this assignment, so it shouldn't be a problem.
Hhinsch (talk) 22:44, 13 November 2017 (PST)
Arash
- What worked?
- We were good at maintaining our own individual tasks and keeping each other updated via text message.
- What didn't work?
- We were unable to schedule time to meet and work effectively.
- What will I do next to fix what didn't work?
- Hopefully we will have lighter course loads and more free time for the next assignment, but besides that we will begin working sooner and try to work in person more than digitally.
Week 12 Team Progress Reflections
Arash
Mary
Nicole
Hayden
| GRNsight Gene Page Project Links | |||||||
|---|---|---|---|---|---|---|---|
| Overview | Deliverables | Reference Format | Guilds | Project Manager | Quality Assurance | Data Analysis | Coder |
| Teams | Page Desiigner | Lights, Camera, InterACTION! | Gene hAPI | JASPAR the Friendly Ghost | |||
Page Desiigner Deliverables Page
Page Desiigner Deliverables Page
Page Desiigner Schedule
Uploaded Files
File:Data Driven Design.zip
File:MaryHaydenWeek12JournalClubPresentation.pptx
File:BiodbPageDesignFinalPresentation .pptx
File:PageDesignREADME.txt
