QLanners Week 13

Used the gene HSF1, which is a transcription factor, to determine which fields should be pulled from each database.

General info we want about each gene:

• Gene ID from each database
• Description/Function (ensembl)
• DNA Sequence (ensembl)
• Protein Sequence (UniProt)
• Locus tag (NCBI)
• Also Known As (NCBI)
• Interactions with other genes
• Consensus Sequence (JASPAR)

We decided that from JASPAR we will pull:

• Gene ID
• Sequence Logo
• Frequency Matrix