CancerSEA Week 5 - Revision history

Imacarae: /* CancerSEA Presentation */ linked updated presentation, fixed links

2019-10-03T07:15:52Z

‎CancerSEA Presentation: linked updated presentation, fixed links

Dmadere: /* Summary Judgement */ uploaded CancerSEA presentation to Wiki page

2019-10-01T06:56:14Z

‎Summary Judgement: uploaded CancerSEA presentation to Wiki page

Dmadere: /* Summary Judgement */ edited type

2019-10-01T05:58:48Z

‎Summary Judgement: edited type

Dmadere: /* Science Quality */ edited typo

2019-10-01T05:42:53Z

‎Science Quality: edited typo

Dmadere: /* General Utility */ added file format

2019-10-01T05:31:53Z

‎General Utility: added file format

Imacarae: /* Acknowledgments */ signed

2019-10-01T05:06:38Z

‎Acknowledgments: signed

Dmadere: /* Science Quality */ edited typos

2019-10-01T04:34:33Z

‎Science Quality: edited typos

Dmadere: /* General Info */ edited typos

2019-10-01T04:06:50Z

‎General Info: edited typos

Dmadere: /* Acknowledgments */ signed wiki

2019-10-01T04:04:09Z

‎Acknowledgments: signed wiki

Dmadere: /* Summary Judgement */ added to summary judgement

2019-10-01T04:02:58Z

‎Summary Judgement: added to summary judgement

@@ Line 73: / Line 73: @@
 ==CancerSEA Presentation==
-[[File:CancerSEA_presentation.pptx]]
+[[Media:CancerSEA_presentation.pptx|CancerSEA Presentation]]
 ==Acknowledgments==

@@ Line 71: / Line 71: @@
 #Is this a professional or "hobby" database? The "hobby" analogy means that it was that person's hobby to make the database. It could mean that it is limited in scope, done by one or a few persons, and seems amateur.
 #*This database is a professional database created by a group of scientists aiming to decode the different functional states of cancer cells and genes that are relative to them. The database is not updated regularly as other professional databases are, but it does provide useful information to assist any colleague studying the functional states of cancer cells. The creators of this database are aiming to update it on a weekly basis, combine some of the single-cell data, condensing the data from the functional states, and adding new functional states in hopes to finding more diagnoses and treatments of cancer.
 ==Acknowledgments==

@@ Line 70: / Line 70: @@
 #*No. This database is strictly informational for those who are specifically studying the functional states of cancer cells. There needs to be prior knowledge of the subject area. The database is very complex to navigate and understand due to the many acronyms and difficult terminologies. If the colleague had a background in the subject area, the acronyms and terms would be understood easier.
 #Is this a professional or "hobby" database? The "hobby" analogy means that it was that person's hobby to make the database. It could mean that it is limited in scope, done by one or a few persons, and seems amateur.
-#*This database is a professional database created by a group of scientists aiming to decode the different functional states of cancer cells and genes that are relative to them. The database is not updated regularly as other professional databases are, but it does provide useful information to assist any colleague studying the functional states of cancer cells. The creators of this database are aiming to update it on a weekly basis, combine some of the single-cell data, condensing the data from the functional groups, and adding new functional states in hopes to finding more diagnoses and treatments of cancer.
+#*This database is a professional database created by a group of scientists aiming to decode the different functional states of cancer cells and genes that are relative to them. The database is not updated regularly as other professional databases are, but it does provide useful information to assist any colleague studying the functional states of cancer cells. The creators of this database are aiming to update it on a weekly basis, combine some of the single-cell data, condensing the data from the functional states, and adding new functional states in hopes to finding more diagnoses and treatments of cancer.
 ==Acknowledgments==

@@ Line 38: / Line 38: @@
 #::-The database first went online in 2018.
 #*How often is the database updated? When was the last update?
-#::-There is currently no information as to how often the database was update, nor is there any information as to when the last update was.
+#::-There is currently no information as to how often the database was updated, nor is there any information as to when the last update was.
 ==General Utility==

@@ Line 50: / Line 50: @@
 #::-The data is provided in a zip file.
 #*What type of files, indicated by the file extension (e.g., .txt, .xml., etc.)?
-#::-When downloading data, the file extensions are compressed in a .zip file, and when decompressed, it is a .txt file.
+#::-When downloading data, the file extensions are compressed in a .zip file, and when decompressed, it is a .txt file. Another file extension used is .xls.
 #*Are they standard or non-standard formats? (i.e., are they following an approved standard for that type of data)?
 #::-The data is in standard format. The data is separated by titles that clearly represent what is expressed in the columns. The data clearly represents the data that is being asked for (i.e., Expression Profiles and Functional State Signature of Interest).

@@ Line 76: / Line 76: @@
 *[[User:Kdahlquist|Dr. Dhalquist]] for presentation instructions and rubric, as well as resources for interpreting our database.
 *'''"Except for what is noted above, this individual journal entry was completed by me and not copied from another source."''' [[User:Dmadere|Dmadere]] ([[User talk:Dmadere|talk]]) 21:04, 30 September 2019 (PDT)
 ==References==

@@ Line 18: / Line 18: @@
 ==Science Quality==
 #Does the content appear to completely cover its content domain?
 #*How many records does the database contain?
 #::-The database contains about 42,000 records of single cancer cell sets.

@@ Line 5: / Line 5: @@
 #*CancerSEA is a database that decodes the various functions of cancer cells.
 #*What biological information (type of data) does it contain? (sequence, structure, model organism, or specialty [what?])
-#*::-It includes the breakdown of different cancer cells that have a specific functions (ie. apoptosis, DNA damage, proliferation)
+#*::-It includes the breakdown of different cancer cells that have specific functions (ie. apoptosis, DNA damage, proliferation).
-#*::-It provides the location of where these cells are usually found in its active form
+#*::-It provides the location of where these cells are usually found in its active form.
-#*::-It states the genes that are involved with each cell's functionality
+#*::-It states the genes that are involved with each cell's functionality.
 #*What type of data source does it have? (primary versus secondary ("meta")? curated versus non-curated? if curated, is it electronic versus human curation? if human curation, is it in-house staff versus community curation?)
-#*::-CancerSEA obtains its data through secondary sources
+#*::-CancerSEA obtains its data through secondary sources.
-#*::-It is curated data extracted by electronic curation
+#*::-It is curated data extracted by electronic curation.
 #What individual or organization maintains the database? (public versus private? large national or multinational entity or small lab group?)
-#*The organization that maintains the database is the College of Bioinformatics Science and Technology, an pubic and international university in China.
+#*The organization that maintains the database is the College of Bioinformatics Science and Technology, a public and international university in China.
 #What is their funding source(s)?
 #*CancerSEA obtains funding through the college and Harbin University of Medicine.

@@ Line 67: / Line 67: @@
 ==Summary Judgement==
 #Would you direct a colleague unfamiliar with the field to use it?
 #Is this a professional or "hobby" database? The "hobby" analogy means that it was that person's hobby to make the database. It could mean that it is limited in scope, done by one or a few persons, and seems amateur.
 ==Acknowledgments==