Cdomin12 and Ntesfaio Week 3 - Revision history

Ntesfaio: /* Protein sequence corresponding to your gene? */ deleted the directions for Protein Sequence

2019-09-17T21:56:07Z

‎Protein sequence corresponding to your gene?: deleted the directions for Protein Sequence

Ntesfaio: /* Protein sequence corresponding to your gene? */ Added title to photo

2019-09-17T21:55:43Z

‎Protein sequence corresponding to your gene?: Added title to photo

Ntesfaio: /* Protein sequence corresponding to your gene? */ Added a photo

2019-09-17T21:54:12Z

‎Protein sequence corresponding to your gene?: Added a photo

Ntesfaio: /* Protein sequence corresponding to your gene? */ Added frame sequencing

2019-09-17T21:41:30Z

‎Protein sequence corresponding to your gene?: Added frame sequencing

Ntesfaio: /* Protein sequence corresponding to your gene? */ Added the link to the translator

2019-09-17T21:40:46Z

‎Protein sequence corresponding to your gene?: Added the link to the translator

Ntesfaio: /* Summary of RAD53/ YPL153C: */ Added to summary

2019-09-17T03:32:09Z

‎Summary of RAD53/ YPL153C:: Added to summary

Ntesfaio: /* Function of your gene? */ function of the gene

2019-09-17T03:28:41Z

‎Function of your gene?: function of the gene

Ntesfaio: /* DNA sequence of your gene? */ Added DNA sequence

2019-09-17T03:19:23Z

‎DNA sequence of your gene?: Added DNA sequence

Ntesfaio: /* Gene ID (identifier) for your gene in all four databases (SGD, NCBI Gene, Ensembl, UniProt)? */ Added gene ID

2019-09-17T03:08:44Z

‎Gene ID (identifier) for your gene in all four databases (SGD, NCBI Gene, Ensembl, UniProt)?: Added gene ID

Ntesfaio: /* Standard name, systematic name, and name description for your gene (from SGD)? */ Added the standard name and systematic name

2019-09-17T03:03:47Z

‎Standard name, systematic name, and name description for your gene (from SGD)?: Added the standard name and systematic name

← Older revision		Revision as of 21:56, 17 September 2019
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	===Protein sequence corresponding to your gene?===		===Protein sequence corresponding to your gene?===
−	Go to the ExPASy tool and translate the DNA sequence of your gene. Which reading frame encodes the protein sequence? Take a screenshot of your results, display it on your wiki page, and state which frame it is.

	[[File:Tesfaiohannes DNA translation.png\|500px\|thumb\|middle\| Translation of the DNA sequence RAD53]]		[[File:Tesfaiohannes DNA translation.png\|500px\|thumb\|middle\| Translation of the DNA sequence RAD53]]

@@ Line 76: / Line 76: @@
 Go to the ExPASy tool and translate the DNA sequence of your gene. Which reading frame encodes the protein sequence? Take a screenshot of your results, display it on your wiki page, and state which frame it is.
-[[File:Tesfaiohannes DNA translation.png|500px|thumb|middle]]
+[[File:Tesfaiohannes DNA translation.png|500px|thumb|middle| Translation of the DNA sequence RAD53]]
 Frame 1 5'3' encodes the entire protein sequence

← Older revision		Revision as of 21:54, 17 September 2019
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	Go to the ExPASy tool and translate the DNA sequence of your gene. Which reading frame encodes the protein sequence? Take a screenshot of your results, display it on your wiki page, and state which frame it is.		Go to the ExPASy tool and translate the DNA sequence of your gene. Which reading frame encodes the protein sequence? Take a screenshot of your results, display it on your wiki page, and state which frame it is.

		+	[[File:Tesfaiohannes DNA translation.png\|500px\|thumb\|middle]]
	Frame 1 5'3' encodes the entire protein sequence		Frame 1 5'3' encodes the entire protein sequence

@@ Line 75: / Line 75: @@
 ===Protein sequence corresponding to your gene?===
 Go to the ExPASy tool and translate the DNA sequence of your gene. Which reading frame encodes the protein sequence? Take a screenshot of your results, display it on your wiki page, and state which frame it is.
 https://web.expasy.org/translate/

@@ Line 75: / Line 75: @@
 ===Protein sequence corresponding to your gene?===
 Go to the ExPASy tool and translate the DNA sequence of your gene. Which reading frame encodes the protein sequence? Take a screenshot of your results, display it on your wiki page, and state which frame it is.
 ===Function of your gene?===

@@ Line 2: / Line 2: @@
 ===Summary of RAD53/ YPL153C:===
 The summary should be one paragraph about the function of your gene based on what you have read in each of the four databases. This is one paragraph that synthesizes information, not one paragraph per database.
 ===Standard name, systematic name, and name description for your gene (from SGD)?===

← Older revision		Revision as of 03:28, 17 September 2019
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	===Function of your gene?===		===Function of your gene?===
		+
		+	RAD53 encodes for a protein kinase which is required for the cell cycle checkpoint. It amplifies the initial signals for proteins that recognize DNA damage. A loss in RAD53 can lead to defects in checkpoint activation.

	===What was different about the information provided about your gene in each of the parent databases?===		===What was different about the information provided about your gene in each of the parent databases?===

← Older revision		Revision as of 03:19, 17 September 2019
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	===DNA sequence of your gene?===		===DNA sequence of your gene?===
		+	ATGGAAAATATTACACAACCCACACAGCAATCCACGCAGGCTACTCAAAGGTTTTTGATT
		+	GAGAAGTTTTCTCAAGAACAGATCGGCGAAAACATTGTGTGCAGGGTCATTTGTACCACG
		+	GGTCAAATTCCCATCCGAGATTTGTCAGCTGATATTTCACAAGTGCTTAAGGAAAAACGA
		+	TCCATAAAGAAAGTTTGGACATTTGGTAGAAACCCAGCCTGTGACTATCATTTAGGAAAC
		+	ATTTCAAGACTGTCAAATAAGCATTTCCAAATACTACTAGGAGAAGACGGTAACCTTTTA
		+	TTGAATGACATTTCCACTAATGGGACCTGGTTAAATGGGCAAAAAGTCGAGAAGAACAGC
		+	AATCAGTTACTGTCTCAAGGTGATGAAATAACCGTTGGTGTAGGCGTGGAATCAGATATT
		+	TTATCTCTGGTCATTTTCATAAACGACAAATTTAAGCAGTGCCTCGAGCAGAACAAAGTT
		+	GATCGCATAAGATCTAACCTGAAAAATACCTCTAAAATAGCTTCTCCTGGTCTTACATCA
		+	TCTACTGCATCATCAATGGTGGCCAACAAGACTGGTATTTTTAAGGATTTTTCGATTATT
		+	GACGAAGTGGTGGGCCAGGGTGCATTTGCCACAGTAAAGAAAGCCATTGAAAGAACTACT
		+	GGGAAAACATTCGCGGTGAAGATTATAAGTAAACGCAAAGTAATAGGCAATATGGATGGT
		+	GTGACAAGAGAGTTAGAAGTATTGCAAAAGCTCAATCATCCAAGGATAGTACGATTGAAA
		+	GGATTTTATGAAGATACTGAGAGTTATTATATGGTGATGGAGTTCGTTTCTGGTGGTGAC
		+	TTAATGGATTTTGTTGCTGCTCATGGTGCGGTTGGAGAAGATGCTGGGAGGGAGATATCC
		+	AGGCAGATACTCACAGCAATAAAATACATTCACTCTATGGGCATCAGCCATCGTGACCTA
		+	AAGCCCGATAATATTCTTATTGAACAAGACGATCCTGTATTGGTAAAGATAACCGACTTT
		+	GGTCTGGCAAAAGTACAAGGAAATGGGTCTTTTATGAAAACCTTCTGTGGCACTTTGGCA
		+	TATGTGGCACCTGAAGTCATCAGAGGTAAAGATACATCCGTATCTCCTGATGAATACGAA
		+	GAAAGGAATGAGTACTCTTCGTTAGTGGATATGTGGTCAATGGGATGTCTTGTGTATGTT
		+	ATCCTAACGGGCCACTTACCTTTTAGTGGTAGCACACAGGACCAATTATATAAACAGATT
		+	GGAAGAGGCTCATATCATGAAGGGCCCCTCAAAGATTTCCGGATATCTGAAGAAGCAAGA
		+	GATTTCATAGATTCATTGTTACAGGTGGATCCAAATAATAGGTCGACAGCTGCAAAAGCC
		+	TTGAATCATCCCTGGATCAAGATGAGTCCATTGGGCTCACAATCATATGGTGATTTTTCA
		+	CAAATATCCTTATCACAATCGTTGTCGCAGCAGAAATTATTAGAAAATATGGACGATGCT
		+	CAATACGAATTTGTCAAAGCGCAAAGGAAATTACAAATGGAGCAACAACTTCAAGAACAG
		+	GATCAGGAAGACCAAGATGGAAAAATTCAAGGATTTAAAATACCCGCACACGCCCCTATT
		+	CGATATACACAGCCCAAAAGCATTGAAGCAGAAACTAGAGAACAAAAACTTTTACATTCC
		+	AATAATACTGAGAATGTCAAGAGCTCAAAGAAAAAGGGTAATGGTAGGTTTTTAACTTTA
		+	AAACCATTGCCTGACAGCATTATTCAAGAAAGCCTGGAGATTCAGCAAGGTGTGAATCCA
		+	TTTTTCATTGGTAGATCCGAGGATTGCAATTGTAAAATTGAAGACAATAGGTTGTCTCGA
		+	GTTCATTGCTTCATTTTCAAAAAGAGGCATGCTGTAGGCAAAAGCATGTATGAATCTCCG
		+	GCACAAGGTTTAGATGATATTTGGTATTGCCACACCGGAACTAACGTGAGCTATTTAAAT
		+	AATAACCGCATGATACAGGGTACGAAATTCCTTTTACAAGACGGAGATGAAATCAAGATC
		+	ATTTGGGATAAAAACAATAAATTTGTCATTGGCTTTAAAGTGGAAATTAACGATACTACA
		+	GGTCTGTTTAACGAGGGATTAGGTATGTTACAAGAACAAAGAGTAGTACTTAAGCAAACA
		+	GCCGAAGAAAAAGATTTGGTGAAAAAGTTAACCCAGATGATGGCAGCTCAACGTGCAAAT
		+	CAACCCTCGGCTTCTTCTTCATCAATGTCGGCTAAGAAGCCGCCAGTTAGCGATACAAAT
		+	AATAACGGCAATAATTCGGTACTAAACGACTTGGTAGAGTCACCGATTAATGCGAATACG
		+	GGGAACATTTTGAAGAGAATACATTCGGTAAGTTTATCGCAATCACAAATTGATCCTAGT
		+	AAGAAGGTTAAAAGGGCAAAATTGGACCAAACCTCAAAAGGCCCCGAGAATTTGCAATTT
		+	TCGTAA

	===Protein sequence corresponding to your gene?===		===Protein sequence corresponding to your gene?===

@@ Line 18: / Line 18: @@
 ===Gene ID (identifier) for your gene in all four databases (SGD, NCBI Gene, Ensembl, UniProt)?===
-Provide hyperlinks to the specific pages for your gene in each of the above databases.
+Gene ID in SGD: S000006074
 ===DNA sequence of your gene?===

← Older revision		Revision as of 03:03, 17 September 2019
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	===Standard name, systematic name, and name description for your gene (from SGD)?===		===Standard name, systematic name, and name description for your gene (from SGD)?===
		+
		+	Standard Name: Rad53
		+
		+	Systematic Name: YPL153C
		+
		+	Name Description: RADiation sensitive
		+
		+	It is a DNA damage response kinase and plays a role in the initiation of DNA replication

	===Gene ID (identifier) for your gene in all four databases (SGD, NCBI Gene, Ensembl, UniProt)?===		===Gene ID (identifier) for your gene in all four databases (SGD, NCBI Gene, Ensembl, UniProt)?===