FunGals Deliverables - Revision history

Eyoung20: /* Statement of Work */ added info

2019-12-14T00:36:56Z

‎Statement of Work: added info

Eyoung20: /* Data and Files */ added report

2019-12-14T00:32:53Z

‎Data and Files: added report

Eyoung20: /* Acknowledgments */ added signature

2019-12-14T00:23:53Z

‎Acknowledgments: added signature

Eyoung20: /* Emma Young */ added signature

2019-12-14T00:23:16Z

‎Emma Young: added signature

Eyoung20: /* Reflection on the Process */ added response

2019-12-14T00:22:31Z

‎Reflection on the Process: added response

Eyoung20: /* Assessment of Project */ formatting

2019-12-14T00:17:57Z

‎Assessment of Project: formatting

Eyoung20: /* Assessment of Project */ added responses

2019-12-14T00:17:21Z

‎Assessment of Project: added responses

Eyoung20: /* Statement of Work */ added information

2019-12-14T00:03:32Z

‎Statement of Work: added information

Eyoung20: /* Statement of Work */ added statement of work

2019-12-13T23:53:52Z

‎Statement of Work: added statement of work

Knguye66: /* Statement of Work */ edit and add info

2019-12-13T21:51:01Z

‎Statement of Work: edit and add info

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 **worked on presentation
 **worked on final paper
 * Provide references or links to artifacts of your work, such as:
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 ***[[Knguye66 Eyoung20 Week 15]]
 ***[[FunGals]]
 ** Other files or documents
 ***[[media:Data_for_FunGals.pptx|FunGals Data on Powerpoint]]
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 ***[[Media:GRN_Model_Red_from_Matlab.zip | Output Workbook & GRNModel from MatLab for Red profile (.zip)]]
 ***[[Media:FunGals_Final_Presentation.pptx | Final Presentation]]
 ** Code or scripts
 ==== Assessment of Project ====

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 ==Data and Files==
 *Group Report
 *Group PowerPoint presentation
 **[[Media:FunGals_Final_Presentation.pptx | Final Presentation]]

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 [[User:Icrespin|Icrespin]] ([[User talk:Icrespin|talk]]) 21:34, 12 December 2019 (PST)
 [[User:Marmas|Marmas]] ([[User talk:Marmas|talk]]) 10:52, 13 December 2019 (PST)
 ==References==

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 * What lesson will you take away from this project that you will still use a year from now?\
 **I think the lesson on how to critically look at a research article is one I will most definitely use for the rest of my scientific career.
 ===Iliana Crespin===

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 * What did you learn?
 ** With your head (biological or computer science principles)
 ** With your heart (personal qualities and teamwork qualities that make things work or not work)?
 ** With your hands (technical skills)?
-* What lesson will you take away from this project that you will still use a year from now?
+*** I learned a lot of new tricks for excel, as well as how to use an access database something I have never used before.
+* What lesson will you take away from this project that you will still use a year from now?\
 ===Iliana Crespin===

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 * Evaluate your team’s portion of the Final Project and Group Report in the following areas:
 *# Content: What is the quality of the work?
-**# the quality of the work was reasonable for the time frame we had. I think each of us put as mush as we were able into the work. Is it the best we could do, no. But I think in order to achieve that best we would have at least need another week. So given the time frame and the stressful and busy time of the semester I am proud of the work we did.
+** the quality of the work was reasonable for the time frame we had. I think each of us put as mush as we were able into the work. Is it the best we could do, no. But I think in order to achieve that best we would have at least need another week. So given the time frame and the stressful and busy time of the semester I am proud of the work we did.
 *# Organization: Comment on the organization of the project and of your group's wiki pages.
-**# I found the formate of our team page a little hard to look through. Everything is present but I feel it could have been organized a bit better. I also found the project organization a little weird. I felt like we rewrote a lot of information between the presentation, the deliverables, the group page and the individual journals. I feel like the repletion although useful for remembering the steps and what we did a little unnecessary. Maybe in the future combining the delieverables with he paper would be a good idea since they both contain the same information.
+** I found the formate of our team page a little hard to look through. Everything is present but I feel it could have been organized a bit better. I also found the project organization a little weird. I felt like we rewrote a lot of information between the presentation, the deliverables, the group page and the individual journals. I feel like the repletion although useful for remembering the steps and what we did a little unnecessary. Maybe in the future combining the delieverables with he paper would be a good idea since they both contain the same information.
 *# Completeness:  Did your team achieve all of the project objectives?  Why or why not?
-**# Yes we achieved all the project objectives although on a time crunch. I think it has to do with the fact that we became flexible with each others needs especially when writing the paper. We helped each other out with each section. If someone was running behind or overwhelmed we helped each other. Illiana and Kaitlyn especially had my back when the methods section overwhelmed me a bit.
+** Yes we achieved all the project objectives although on a time crunch. I think it has to do with the fact that we became flexible with each others needs especially when writing the paper. We helped each other out with each section. If someone was running behind or overwhelmed we helped each other. Illiana and Kaitlyn especially had my back when the methods section overwhelmed me a bit.
 ==== Reflection on the Process ====

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 ==== Statement of Work ====
-* Describe exactly what you did on the project.
+* As a Data Analysis I worked with [[User:knguye66|Kaitlyn Nguyen]] to analysis the data from the Kitagawa et al. 2002 journal article. Here is a break down of what I did out of the Data Analysis work we split.
 **Ran the Sanity Check on the ANOVA DATA
-**Created the STEM input sheet [[media:Thiuram_yeast_experiment.xlsx|ANOVA & STEM workbook (.xlsx)]]
+**Created the STEM input sheet
 **Helped to Run STEM
-**Created the Combined Gene Lists [[media:Genelist_combined_profiles_FunGals.xlsx| YEASTRACT Rank by TF - Green and Red Profiles (.xlsx)]]
+**Created the Combined Gene Lists
 **Ran The GENElist through YEASTRACT
 **Chose the Genes for the network and ran them Through YEATTRACT
-**Visualized the unweighted networks in GRNsighted[[media:FunGals_Green_Profile_RegulationMatrix_Documented_2019123_2322_1272399515.xlsx| Green Regulation Matrix/network (.xlsx)]]  [[media:FunGals Red Profile RegulationMatrix Documented 2019123 2318 1127808084.xlsx| Input Workbook Red network (.xlsx)]]
+**Visualized the unweighted networks in GRNsighted
-**Created the Red profile GRNmap input worksheet [[media:Queries_Run_for_the_Red_Profile_in_Acess_Database.pptx|Query Designs Red Profile]] [[media:FunGals Red Profile RegulationMatrix Documented 2019123 2318 1127808084.xlsx| Input Workbook Red network (.xlsx)]]
+**Created the Red profile GRNmap input worksheet
-**Ran the Red profile GRNmap input worksheet through GRNmap using MATLAb [[Media:GRN_Model_Red_from_Matlab.zip | Output Workbook & GRNModel from MatLab for Red profile (.zip)]]
+**Ran the Red profile GRNmap input worksheet through GRNmap using MATLAb
 ** Visualized the GRNmap weighted network results in GRNsight
-** worked on the shared individual journal pages to record the process [[Knguye66 Eyoung20 Week 12/13]] [[Knguye66 Eyoung20 Week 15]]
+** worked on the shared individual journal pages to record the process
-**added milestones and reflections to group pages [[FunGals]]
+**added milestones and reflections to group pages
 * Provide references or links to artifacts of your work, such as:
 ** Wiki pages
 ** Other files or documents
 ** Code or scripts

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 * Describe exactly what you did on the project.
-** As a Data Analyst in this assignment, I was in charge of statistical analysis (ie. creating the ANOVA sheet), downloading GOlists and plugging it into the geneontology database, creating workbooks upon workbooks, running queries for MS Access as well as, formatting and editing powerpoints and group pages.
+** As a Data Analyst in this assignment, I was in charge of statistical analysis (ie. creating the ANOVA sheet), downloading GOlists and plugging it into the geneontology database, creating input workbooks and output workbooks for the Green Profile, running queries for MS Access as well as, formatting and editing powerpoints and group pages, and helping with additional tasks necessary for the project to flow cohesively.
 * Provide references or links to artifacts of your work, such as:
 ** Wiki pages: Combined journal page with Emma Young
 ** https://xmlpipedb.cs.lmu.edu/biodb/fall2019/index.php/Knguye66_Eyoung20_Week_12/13
 ** https://xmlpipedb.cs.lmu.edu/biodb/fall2019/index.php/Knguye66_Eyoung20_Week_15
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 *** [[media:GRNmap FunGals Green profile.zip | Output Workbook & GRNModel from MatLab for Green profile (.zip)]]
 *** [[media:Green Query Acess.pptx|Query Designs Green Profile]]
 ==== Assessment of Project ====